#!/bin/csh -v
# File: CreateMaeFullRefManual.do
#
# File: CreateMaeFullRefManual.do - script to build single working catHMAE.html
# doc file that contains the full Maexplorer Reference Manual including additional
# Web site documentation on releases, installing MAExplorer, MAEPlugins,
# the Cvt2Mae converter, etc.
#
# P. Lemkin $Date: 2002/6/04:51:03 $
echo "1. NOTE: execute this script in the MAExplorer/scripts/ directory."
echo "It will compute the catHMAE.html in that working directory."
echo ""
echo "2. Building single MAExplorer catHMAE.html document file"
echo "
" > catHMAE.html
echo "MAExplorer - cDNA Microarray Exploratory Data Analysis" >> catHMAE.html
echo "" >> catHMAE.html
echo '' >> catHMAE.html
cat ../MaeRefMan/hmaeDoc.html >> catHMAE.html
cat ../MaeRefMan/hmaeDoc1.html >> catHMAE.html
cat ../MaeRefMan/hmaeDoc2.html >> catHMAE.html
cat ../MaeRefMan/hmaeDoc2.1.html >> catHMAE.html
cat ../MaeRefMan/hmaeDoc2.2.html >> catHMAE.html
cat ../MaeRefMan/hmaeDoc2.3.html >> catHMAE.html
cat ../MaeRefMan/hmaeDoc2.4.html >> catHMAE.html
cat ../MaeRefMan/hmaeDoc2.4.1.html >> catHMAE.html
cat ../MaeRefMan/hmaeDoc2.4.2.html >> catHMAE.html
cat ../MaeRefMan/hmaeDoc2.4.3.html >> catHMAE.html
cat ../MaeRefMan/hmaeDoc2.4.4.html >> catHMAE.html
cat ../MaeRefMan/hmaeDoc2.4.5.html >> catHMAE.html
cat ../MaeRefMan/hmaeDoc2.4.6.html >> catHMAE.html
cat ../MaeRefMan/hmaeDoc2.5.html >> catHMAE.html
cat ../MaeRefMan/hmaeDoc2.6.html >> catHMAE.html
cat ../MaeRefMan/hmaeDoc2.7.html >> catHMAE.html
cat ../MaeRefMan/hmaeDoc3.html >> catHMAE.html
cat ../MaeRefMan/hmaeDoc4.html >> catHMAE.html
cat ../MaeRefMan/hmaeReleaseArchive.html >> catHMAE.html
cat ../MaeRefMan/hmaeDocAck.html >> catHMAE.html
cat ../MaeRefMan/hmaeDocRef.html >> catHMAE.html
cat ../MaeRefMan/hmaeDocA.html >> catHMAE.html
cat ../MaeRefMan/hmaeDocB.html >> catHMAE.html
cat ../MaeRefMan/hmaeDocC.html >> catHMAE.html
cat ../MaeRefMan/hmaeDocD.html >> catHMAE.html
cat ../MaeRefMan/hmaeDocE.html >> catHMAE.html
cat ../MaeRefMan/hmaeInstall.html >> catHMAE.html
cat ../MAEPlugins/hmaeMAEPluginsIndex.html >> catHMAE.html
cat ../MAEPlugins/hmaeMAEPluginsDesign.html >> catHMAE.html
cat ../MAEPlugins/hmaeMAEPluginsOpenJavaAPI.html >> catHMAE.html
cat ../MAEPlugins/hmaeMAEPluginsHowToWrite.html >> catHMAE.html
cat ../MAEPlugins/hmaeMAEPluginsJavaExamples.html >> catHMAE.html
cat ../MAEPlugins/hmaeMAEPluginsAllPlugins.html >> catHMAE.html
cat ../Cvt2Mae/docs/c2mIndex.html >> catHMAE.html
cat ../Cvt2Mae/docs/c2mDesc.html >> catHMAE.html
cat ../Cvt2Mae/docs/c2mFAQ.html >> catHMAE.html
cat ../Cvt2Mae/docs/c2mAppendix.html >> catHMAE.html
cat ../Cvt2Mae/docs/c2mAffyExample.html >> catHMAE.html
cat ../Cvt2Mae/docs/c2mRevision.html >> catHMAE.html
cat ../Cvt2Mae/docs/c2mInstall.html >> catHMAE.html
cat ../MaeRefMan/hmaeDownload.html >> catHMAE.html
cat ../MaeRefMan/hmaeJavadocs.html >> catHMAE.html
cat ../MaeRefMan/hmaeMozilla1.1.html >> catHMAE.html
cat ../MaeRefMan/hmaeLEGAL.html >> catHMAE.html
cat ../MaeRefMan/hmaeDocFigs.html >> catHMAE.html
cat ../MaeRefMan/hmaeDocTbls.html >> catHMAE.html
cat ../MaeRefMan/hmaeDocGlossary.html >> catHMAE.html
cat ../MaeRefMan/hmaeDocIndex.html >> catHMAE.html
echo "3. Finished building catHMAE.html"
echo ""
ls -l catHMAE.html
echo "4. Moving catHMAE.html into ../MaeRefMan/hmaeFullRefMan.html"
echo ""
mv catHMAE.html ../MaeRefMan/hmaeFullRefMan.html
ls -l ../MaeRefMan/hmaeFullRefMan.html
date