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java.lang.Object | +--MJAbase | +--MJAgenomicDB
MAExplorer Open Java API class to access MJAgenomicDB methods and data structures. Access genomic databases on the Internet.
List of methods available to Plugin-writers
get_useGenBankViewerFlag() - access popup Web browser GenBank database get_useUniGeneViewerFlag() - access popup Web browser UniGene database get_useDbESTViewerFlag() - access popup Web browser dbEST database get_useOMIMViewerFlag() - access popup Web browser OMIM database get_useMadbViewerFlag() - access popup Web browser mAdb clone database get_useLocksLinkViewerFlag() - access popup Web browser LocusLink database get_useMedMinerViewerFlag() - access popup Web browser MedMiner database get_useSwissProtViewerFlag() - access popup Web browser SwissProt database get_usePIRViewerFlag() - access popup Web browser PIR database ------- manipulate user-defined genomicDB URLs -------- get_genomicDB_URLs() - get user-defined genomic DB URLs set_genomicDB_URLs() - set user-defined genomic DB URLs
This work was produced by Peter Lemkin of the National Cancer Institute, an agency of the United States Government. As a work of the United States Government there is no associated copyright. It is offered as open source software under the Mozilla Public License (version 1.1) subject to the limitations noted in the accompanying LEGAL file. This notice must be included with the code. The MAExplorer Mozilla and Legal files are available on http://maexplorer.sourceforge.net/.
Method Summary | |
java.util.Hashtable |
get_genomicDB_URLs()
get_genomicDB_URLs() - get user-defined genomic DB URLs |
boolean |
get_useDbESTViewerFlag(boolean value)
get_useDbESTViewerFlag() - access popup Web browser dbEST database |
boolean |
get_useGenBankViewerFlag(boolean value)
get_useGenBankViewerFlag() - access popup Web browser GenBank database |
boolean |
get_useLocksLinkViewerFlag(boolean value)
get_useLocksLinkViewerFlag() - access popup Web browser LocusLink database |
boolean |
get_useMadbViewerFlag(boolean value)
get_useMadbViewerFlag() - access popup Web browser mAdb clone database |
boolean |
get_useMedMinerViewerFlag(boolean value)
get_useMedMinerViewerFlag() - access popup Web browser MedMiner database |
boolean |
get_useOmimViewerFlag(boolean value)
get_useOmimViewerFlag() - access popup Web browser OMIM database |
boolean |
get_usePIRViewerFlag(boolean value)
get_usePIRViewerFlag() - access popup Web browser PIR database |
boolean |
get_useSwissProtViewerFlag(boolean value)
get_useSwissProtViewerFlag() - access popup Web browser SwissProt database |
boolean |
get_useUniGeneViewerFlag(boolean value)
get_useUniGeneViewerFlag() - access popup Web browser UniGene database |
boolean |
set_genomicDB_URLs(int nGenomicDBs,
java.lang.String[] genomicMenuEntires,
java.lang.String[] genomicURL,
java.lang.String[] genomicURLepilogue,
java.lang.String[] genomicIDreqired)
set_genomicDB_URLs() - set user-defined genomic DB URLs |
Methods inherited from class MJAbase |
cvtHashtable2SimpleTable, cvtTable2Hashtable |
Methods inherited from class java.lang.Object |
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Method Detail |
public final boolean get_useGenBankViewerFlag(boolean value)
public final boolean get_useUniGeneViewerFlag(boolean value)
public final boolean get_useDbESTViewerFlag(boolean value)
public final boolean get_useOmimViewerFlag(boolean value)
public final boolean get_useMadbViewerFlag(boolean value)
public final boolean get_useLocksLinkViewerFlag(boolean value)
public final boolean get_useMedMinerViewerFlag(boolean value)
public final boolean get_useSwissProtViewerFlag(boolean value)
public final boolean get_usePIRViewerFlag(boolean value)
public final java.util.Hashtable get_genomicDB_URLs()
The Hashtable list returned is defined as: Name - Value "nGenomicDBs" - int number of genomic databases "genomicMenuEntires" - String[] list of MAExplorer View menu entries for each DB "genomicURL" - String[] list of URL base addresses for each DB "genomicURLepilogue" - String[] optional list of URL epilogue addresses for each DB "genomicIDreqired" - String[] list of "," separated lists of identifiers required Eg "Clone_ID,GenBankAcc,etc."
public final boolean set_genomicDB_URLs(int nGenomicDBs, java.lang.String[] genomicMenuEntires, java.lang.String[] genomicURL, java.lang.String[] genomicURLepilogue, java.lang.String[] genomicIDreqired)
nGenomicDBs
- is number of genomic databasesgenomicMenuEntires
- for MAExplorer View menu entries
for each databasegenomicURL
- is list of URL base addresses for each DBgenomicURLepilogue
- is optional list of URL epilogue
addresses for each DBgenomicIDreqired
- is list of "," separated lists
of identifiers required
Eg "Clone_ID,GenBankAcc,etc."
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