Class MaInfoTable

java.lang.Object
  |
  +--SimpleTable
        |
        +--Table
              |
              +--MaInfoTable

class MaInfoTable

extends Table

This class reads optional extra sample specific information from the MaInfoTable.txt file.

Version:

$Date: 2002/12/11 17:23:26 $ $Revision: $

Author:

P. Lemkin (NCI), G. Thornwall (SAIC), NCI-Frederick, Frederick, MD

See Also:

MAExplorer Home, Table

Field Summary

(package private) boolean	hasValidDataFlag flag: set if data was read ok
(package private) int	idxBGAvg lookup field index.
(package private) int	idxBGLow lookup field index.
(package private) int	idxBGRms lookup field index.
(package private) int	idxDatabase_File lookup field index.
(package private) int	idxDatabaseFileID lookup field index.
(package private) int	idxDate lookup field index.
(package private) int	idxFilterType_Descr lookup field index.
(package private) int	idxHeader_Descr lookup field index.
(package private) int	idxResearcher lookup field index.
(package private) int	idxShortName lookup field index.
(package private) int	idxTableName lookup field index.
private MAExplorer	mae link to global MAExplorer instance
private java.lang.String	maeTbl name of the remap Table

Fields inherited from class Table

bufSize, fileOKflag, fio

Fields inherited from class SimpleTable

fileName, msg, tCols, tData, tFields, title, tRows

Constructor Summary

(package private)

MaInfoTable(MAExplorer mae, java.lang.String fileName) MaInfoTable() - constructor

Method Summary

(package private) java.lang.String[]	getTableRowByMaInfoId(java.lang.String Database_File) getTableRowByMaInfoId() - get row of MaInfos data by MaInfo_Id
private boolean	removeMissingEntries() removeMissingEntries() - remove missing entries if not enabled to view
private void	setupFieldIndexes() setupFieldIndexes() - setup indexes for common fields for speedups

Methods inherited from class Table

copyTable, createFileTable, getArrayOfTabDelimitedTokens, getData, getTableRowsSubset, getTableRowsSubset, insertTblInULHCtable, lookupFieldIdxAndRemapFieldName, makeTabDelimReport, readTable, storeDataBufParser

Methods inherited from class SimpleTable

freeTable, getTableRowFieldByRowIdx, getTableRowFieldIdxByRowIdx, lookupFieldIdx, setFieldData, setRowData, trimWhitespace

Methods inherited from class java.lang.Object

, clone, equals, finalize, getClass, hashCode, notify, notifyAll, registerNatives, toString, wait, wait, wait

Field Detail

mae

private MAExplorer mae

link to global MAExplorer instance

maeTbl

private final java.lang.String maeTbl

name of the remap Table

idxDatabase_File

int idxDatabase_File

lookup field index. -1 if does not exist

idxDatabaseFileID

int idxDatabaseFileID

lookup field index. -1 if does not exist

idxTableName

int idxTableName

lookup field index. -1 if does not exist

idxFilterType_Descr

int idxFilterType_Descr

lookup field index. -1 if does not exist

idxShortName

int idxShortName

lookup field index. -1 if does not exist

idxHeader_Descr

int idxHeader_Descr

lookup field index. -1 if does not exist

idxDate

int idxDate

lookup field index. -1 if does not exist

idxResearcher

int idxResearcher

lookup field index. -1 if does not exist

idxBGLow

int idxBGLow

lookup field index. -1 if does not exist

idxBGAvg

int idxBGAvg

lookup field index. -1 if does not exist

idxBGRms

int idxBGRms

lookup field index. -1 if does not exist

hasValidDataFlag

boolean hasValidDataFlag

flag: set if data was read ok

Constructor Detail

MaInfoTable

MaInfoTable(MAExplorer mae,
            java.lang.String fileName)

MaInfoTable() - constructor

Parameters:

mae - is MAExplorer instance

fileName - is name of table file to read

See Also:

Table, removeMissingEntries(), setupFieldIndexes()

Method Detail

setupFieldIndexes

private void setupFieldIndexes()

setupFieldIndexes() - setup indexes for common fields for speedups

See Also:

Table.lookupFieldIdxAndRemapFieldName(java.lang.String, java.lang.String)

getTableRowByMaInfoId

java.lang.String[] getTableRowByMaInfoId(java.lang.String Database_File)

getTableRowByMaInfoId() - get row of MaInfos data by MaInfo_Id

Parameters:

Database_File - field to test

Returns:

data else null if failed.

removeMissingEntries

private boolean removeMissingEntries()

removeMissingEntries() - remove missing entries if not enabled to view

Returns:

true if succeed

See Also:

SamplesTable.isHPnameIsAccessible(java.lang.String)