Hierarchy For All Packages

Package Hierarchies:

MAEPlugin, MAEPlugin.analysis, MAEPlugin.connection, MAEPlugin.popup

Class Hierarchy

• class java.lang.Object
  • class java.lang.ClassLoader
    • class MAEPlugin.FileClassLoader
    • class MAEPlugin.JarClassLoader
  • class ClusterGenes
  • class ClusterGenes.Cluster
  • class ClusterSamples
  • class java.awt.Component (implements java.awt.image.ImageObserver, java.awt.MenuContainer, java.io.Serializable)
    • class java.awt.Canvas (implements javax.accessibility.Accessible)
      • class ClusterGramCanvas
      • class Draw2Dplot (implements java.awt.event.MouseListener, java.awt.event.MouseMotionListener)
        • class DrawScatterPlot
      • class DrawHistogram (implements java.awt.event.MouseListener)
      • class DrawRatioHistogram (implements java.awt.event.MouseListener)
      • class ExprProfileCanvas
      • class ScrollableImageCanvas (implements java.awt.event.MouseListener, java.awt.event.MouseMotionListener)
      • class StatusCanvas
    • class java.awt.Container
      • class java.awt.Panel (implements javax.accessibility.Accessible)
        • class java.applet.Applet
          • class MAExplorer (implements java.lang.Runnable)
        • class ArrayScroller (implements java.awt.event.AdjustmentListener, java.awt.event.MouseListener, java.awt.event.MouseMotionListener)
        • class ChooserGUI (implements java.awt.event.ActionListener)
        • class ExprProfileOverlay (implements java.awt.event.AdjustmentListener)
        • class ExprProfilePanel (implements java.awt.event.MouseListener, java.awt.event.MouseMotionListener)
        • class ExprProfileScrollPane (implements java.awt.event.AdjustmentListener)
        • class MAEPlugin.popup.PluginUnLoader.UnloaderDialog.PluginList (implements java.awt.event.ActionListener, java.awt.event.ItemListener)
        • class PopupCondChooserGUI (implements java.awt.event.ActionListener, java.awt.event.WindowListener)
        • class PopupOrderedCondChooserGUI (implements java.awt.event.ActionListener, java.awt.event.WindowListener)
        • class SpreadSheet
        • class SSspreadPanel (implements java.awt.event.MouseListener)
        • class SSstatusBar
      • class java.awt.ScrollPane (implements javax.accessibility.Accessible)
        • class DrawClusterGram (implements java.awt.event.ActionListener, java.awt.event.ItemListener, java.awt.event.MouseListener, java.awt.event.MouseMotionListener, java.awt.event.WindowListener)
        • class PopupCondChooser.CondParamEditForm (implements java.awt.event.TextListener)
        • class PopupOrderedCondChooser.CondParamEditForm (implements java.awt.event.TextListener)
      • class java.awt.Window (implements javax.accessibility.Accessible)
        • class java.awt.Dialog
          • class MAEPlugin.popup.PluginUnLoader.UnloaderDialog
          • class PopupBinOprDialogQuery (implements java.awt.event.ActionListener, java.awt.event.ItemListener, java.awt.event.WindowListener)
          • class PopupCondChooser.ChoiceList (implements java.awt.event.ActionListener, java.awt.event.ItemListener, java.awt.event.WindowListener)
          • class PopupCondChooser.CondDialogBox (implements java.awt.event.ActionListener, java.awt.event.WindowListener)
          • class PopupCondChooser.PopupTextField (implements java.awt.event.ActionListener, java.awt.event.WindowListener)
          • class PopupDialogQuery (implements java.awt.event.ActionListener, java.awt.event.ItemListener, java.awt.event.WindowListener)
          • class PopupLoginDialogQuery (implements java.awt.event.ActionListener, java.awt.event.WindowListener)
          • class PopupOrderedCondChooser.ChoiceList (implements java.awt.event.ActionListener, java.awt.event.ItemListener, java.awt.event.WindowListener)
          • class PopupOrderedCondChooser.CondDialogBox (implements java.awt.event.ActionListener, java.awt.event.WindowListener)
          • class PopupOrderedCondChooser.PopupTextField (implements java.awt.event.ActionListener, java.awt.event.WindowListener)
          • class PopupScrollableSelector (implements java.awt.event.ActionListener, java.awt.event.ItemListener, java.awt.event.WindowListener)
        • class java.awt.Frame (implements java.awt.MenuContainer)
          • class ExprProfilePopup (implements java.awt.event.ActionListener, java.awt.event.ItemListener, java.awt.event.WindowListener)
          • class Guesser (implements java.awt.event.ActionListener, java.awt.event.FocusListener, java.awt.event.WindowListener)
            • class PopupGeneGuesser
            • class PopupHPmenuGuesser
            • class PopupProjDirGuesser
          • class LogTextFrame (implements java.awt.event.ActionListener, java.awt.event.WindowListener)
          • class MenuBarFrame (implements java.awt.event.ActionListener, java.awt.event.ItemListener, java.awt.event.KeyListener, java.awt.event.WindowListener)
          • class PopupCondChooser (implements java.awt.event.ActionListener, java.awt.event.ItemListener, java.awt.event.WindowListener)
          • class PopupEditRscript (implements java.awt.event.ActionListener, java.awt.event.ItemListener, java.awt.event.KeyListener, java.awt.event.TextListener, java.awt.event.WindowListener)
          • class PopupHPChooser (implements java.awt.event.ActionListener, java.awt.event.WindowListener)
          • class PopupOrderedCondChooser (implements java.awt.event.ActionListener, java.awt.event.ItemListener, java.awt.event.WindowListener)
          • class RtestBase (implements java.awt.event.ActionListener, java.awt.event.ItemListener, java.awt.event.WindowListener)
            • class Rtest
          • class ShowExprProfilesPopup (implements java.awt.event.ActionListener, java.awt.event.ItemListener, java.awt.event.WindowListener)
          • class ShowPlotPopup (implements java.awt.event.ActionListener, java.awt.event.AdjustmentListener, java.awt.event.ItemListener, java.awt.event.MouseListener, java.awt.event.WindowListener)
          • class ShowSpreadsheetPopup (implements java.awt.event.ActionListener, java.awt.event.ItemListener, java.awt.event.WindowListener)
          • class ShowStringPopup (implements java.awt.event.ActionListener, java.awt.event.WindowListener)
          • class StateScrollers (implements java.awt.event.ActionListener, java.awt.event.AdjustmentListener, java.awt.event.MouseListener, java.awt.event.WindowListener)
    • class java.awt.Scrollbar (implements javax.accessibility.Accessible, java.awt.Adjustable)
      • class SSscrollHorizontal (implements java.awt.event.AdjustmentListener)
      • class SSscrollVertical (implements java.awt.event.AdjustmentListener)
    • class java.awt.TextComponent (implements javax.accessibility.Accessible)
      • class java.awt.TextField
        • class SStextCell
  • class CompositeDatabase
  • class Condition
  • class Config
  • class DrawPseudoImage
  • class EditedGeneList
  • class EventMenu (implements java.io.FilenameFilter)
  • class ExprProfile
  • class FileIO
  • class Filter
  • class Gene
  • class GeneBitSet
  • class GeneClass
  • class GeneGeneDist
  • class GeneList
  • class GetParams
  • class GridCoords
  • class HierClustNode
  • class HPxyData
  • class MAEPlugin.JarResources
  • class java.awt.event.KeyAdapter (implements java.awt.event.KeyListener)
    • class KeyEventHandler
  • class MaeJavaAPI (implements MAEPlugin.MAEStub)
  • class MAEPlugin.MAEPlugin (implements MAEPlugin.PluginStub)
    • class MAEPlugin.CheckBoxMenuPlugin (implements java.awt.event.ItemListener)
      • class MAEPlugin.analysis.AnalysisPlugin
        • class MAEPlugin.analysis.FilterPlugin
        • class MAEPlugin.analysis.NormalizationPlugin (implements MAEPlugin.Normalization)
          • class GenNormalizationPlugin (implements MAEUpdateListener)
    • class MAEPlugin.MenuPlugin (implements java.awt.event.ActionListener)
      • class MAEPlugin.connection.ConnectionPlugin
      • class MAEPlugin.popup.PopupPlugin
        • class MAEPlugin.popup.PluginLoader (implements java.io.FilenameFilter)
        • class MAEPlugin.popup.PluginUnLoader
  • class MaHybridSample
  • class Maps
  • class MathMAE
  • class MC_Cube
  • class MedianCut
  • class MJAbase
    • class MJAcluster
    • class MJAcondition
    • class MJAeval
    • class MJAexprProfile
    • class MJAfilter
    • class MJAgene
    • class MJAgeneList
    • class MJAgenomicDB
    • class MJAgeometry
    • class MJAhelp
    • class MJAhistogram
    • class MJAmath
    • class MJAnormalization
    • class MJAplot
      • class MJAscrollablePlot
    • class MJApopupRegistry
    • class MJAproperty
    • class MJApropList
    • class MJAreport
    • class MJAReval
    • class MJAsample
    • class MJAsampleList
    • class MJAsort
    • class MJAstate
    • class MJAstatistics
    • class MJAutil
  • class java.awt.event.MouseAdapter (implements java.awt.event.MouseListener)
    • class ChooserGUI.MouseEventHandler
    • class MouseEventHandler
    • class PopupCondChooserGUI.MouseEventHandler
    • class PopupOrderedCondChooserGUI.MouseEventHandler
  • class java.util.Observable
    • class DelFileWalker (implements java.util.Observer)
  • class OverlayMap
  • class MAEPlugin.PluginFilenameFilter (implements java.io.FilenameFilter)
  • class PopupCondChooser.CondData
  • class PopupOrderedCondChooser.OclListData
  • class PopupRegistry
  • class Report
  • class RevalBase
    • class Reval
  • class RgenDemo
  • class RLO
  • class SampleSets
  • class SimpleTable
    • class Table
      • class ConfigTable
      • class GipoTable
      • class MaHPquantTable
      • class MaInfoTable
      • class SamplesTable
  • class SortMAE
  • class SpotData
  • class SpotFeatures
  • class SStextArray
  • class StageNames
  • class Statistics
  • class TestPlugin
  • class TestPluginCode
  • class java.lang.Throwable (implements java.io.Serializable)
    • class java.lang.Exception
      • class DryRotException
      • class JavaCGIBridgeTimeOutException
      • class MAEPlugin.PluginException
        • class MAEPlugin.DuplicatePluginLoadException
        • class MAEPlugin.MaxNumberPluginsException
  • class java.net.URLConnection
    • class java.net.HttpURLConnection
      • class JavaCGIBridge (implements java.lang.Runnable)
  • class UserState
  • class Util
  • class WriteGifEncoder
  • class WriteGifEncoderHashitem

Interface Hierarchy

• interface MAEPlugin.MAEStub
• interface MAEUpdateListener
• interface MAEPlugin.Normalization
• interface MAEPlugin.PluginStub