Class ExprProfilePanel

java.lang.Object
  |
  +--java.awt.Component
        |
        +--java.awt.Container
              |
              +--java.awt.Panel
                    |
                    +--ExprProfilePanel

All Implemented Interfaces:

javax.accessibility.Accessible, java.util.EventListener, java.awt.image.ImageObserver, java.awt.MenuContainer, java.awt.event.MouseListener, java.awt.event.MouseMotionListener, java.io.Serializable

class ExprProfilePanel

extends java.awt.Panel

implements java.awt.event.MouseListener, java.awt.event.MouseMotionListener

This class creates and displays a window containing an ExprProfileCanvas. The expression profile is drawin in the ExprProfileCanvas. It also contains mouse handlers for clicking on points in the canvas.

This work was produced by Peter Lemkin of the National Cancer Institute, an agency of the United States Government. As a work of the United States Government there is no associated copyright. It is offered as open source software under the Mozilla Public License (version 1.1) subject to the limitations noted in the accompanying LEGAL file. This notice must be included with the code. The MAExplorer Mozilla and Legal files are available on http://maexplorer.sourceforge.net/.

Version:

$Date: 2002/10/14 20:17:25 $ $Revision: $

Author:

P. Lemkin (NCI), Gb. Thornwall (SAIC), NCI-Frederick, Frederick, MD

See Also:

MAExplorer Home, ExprProfileScrollPane, ShowExprProfilesPopup, Serialized Form

Inner classes inherited from class java.awt.Panel

java.awt.Panel.AccessibleAWTPanel

Inner classes inherited from class java.awt.Container

java.awt.Container.AccessibleAWTContainer

Inner classes inherited from class java.awt.Component

java.awt.Component.AccessibleAWTComponent, java.awt.Component.AWTTreeLock

Field Summary

(package private) ExprProfileCanvas	epc expression profile canvas we put into panel
(package private) MAExplorer	mae link to global MAExplorer instance

Fields inherited from class java.awt.Panel

base, nameCounter, serialVersionUID

Fields inherited from class java.awt.Container

component, containerListener, containerSerializedDataVersion, dbg, dispatcher, layoutMgr, listeningBoundsChildren, listeningChildren, maxSize, ncomponents, printing, printingThreads

Fields inherited from class java.awt.Component

accessibleContext, actionListenerK, adjustmentListenerK, appContext, background, BOTTOM_ALIGNMENT, CENTER_ALIGNMENT, changeSupport, componentListener, componentListenerK, componentOrientation, componentSerializedDataVersion, containerListenerK, cursor, dropTarget, enabled, eventMask, focusListener, focusListenerK, font, foreground, graphicsConfig, hasFocus, height, hierarchyBoundsListener, hierarchyBoundsListenerK, hierarchyListener, hierarchyListenerK, incRate, inputMethodListener, inputMethodListenerK, isInc, isPacked, itemListenerK, keyListener, keyListenerK, LEFT_ALIGNMENT, locale, LOCK, metrics, minSize, mouseListener, mouseListenerK, mouseMotionListener, mouseMotionListenerK, name, nameExplicitlySet, newEventsOnly, ownedWindowK, parent, peer, peerFont, popups, prefSize, privateKey, RIGHT_ALIGNMENT, textListenerK, TOP_ALIGNMENT, valid, visible, width, windowClosingException, windowListenerK, x, y

Fields inherited from interface java.awt.image.ImageObserver

ABORT, ALLBITS, ERROR, FRAMEBITS, HEIGHT, PROPERTIES, SOMEBITS, WIDTH

Constructor Summary

(package private)

ExprProfilePanel(MAExplorer mae, int mid, java.lang.String title, java.awt.Font font, int preferredWidth, int preferredHeight, boolean showKmeansDataFlag, boolean drawLabelsFlag) ExprProfilePanel() - Constructor to display expression profile in canvas.

Method Summary

java.awt.Dimension	getMinimumSize() getMinimumSize() - get the minimumpreferred size
java.awt.Dimension	getPreferredSize() getPreferredSize() - get the preferred size
void	mouseClicked(java.awt.event.MouseEvent e)
void	mouseDragged(java.awt.event.MouseEvent e) mouseDragged() - just report (HP, Quant) of nearest HP sample near where mouse is
void	mouseEntered(java.awt.event.MouseEvent e)
void	mouseExited(java.awt.event.MouseEvent e)
void	mouseMoved(java.awt.event.MouseEvent e)
void	mousePressed(java.awt.event.MouseEvent e) mousePressed() - handle mouse Pressed events
void	mouseReleased(java.awt.event.MouseEvent e) mouseReleased() - handle mouse Released events
void	paint(java.awt.Graphics g) paint() - draw the expression profile plot only repaint if a legal gene MID.
(package private) void	setPlotEPmeansData(int mid, int hpDataNbr, float maxHPdataMn, float[] hpDataMn, float[] hpDataSD, boolean doMeanPlotsFlag) setPlotEPmeansData() - set expression profile to plot means data.
(package private) boolean	updateData(int mid, java.lang.String title, boolean drawLabelsFlag) updateData() - update expression profile with new gene data if a legal gene MID.

Methods inherited from class java.awt.Panel

, addNotify, constructComponentName, getAccessibleContext

Methods inherited from class java.awt.Container

add, add, add, add, add, addContainerListener, addImpl, adjustListeningChildren, applyOrientation, checkGD, countComponents, createChildHierarchyEvents, createHierarchyEvents, deliverEvent, dispatchEventImpl, dispatchEventToSelf, doLayout, eventEnabled, findComponentAt, findComponentAt, findComponentAt, getAccessibleAt, getAccessibleChild, getAccessibleChildrenCount, getAlignmentX, getAlignmentY, getComponent, getComponentAt, getComponentAt, getComponentCount, getComponents_NoClientCode, getComponents, getInsets, getLayout, getListeners, getMaximumSize, getMouseEventTarget, getWindow, initIDs, insets, invalidate, invalidateTree, isAncestorOf, layout, lightweightPaint, lightweightPrint, list, list, locate, minimumSize, nextFocus, numListening, paintComponents, paintHeavyweightComponents, paramString, postProcessKeyEvent, postsOldMouseEvents, preferredSize, preProcessKeyEvent, print, printComponents, printHeavyweightComponents, processContainerEvent, processEvent, proxyEnableEvents, proxyRequestFocus, readObject, remove, remove, removeAll, removeContainerListener, removeNotify, setFocusOwner, setFont, setLayout, transferFocus, update, validate, validateTree, writeObject

Methods inherited from class java.awt.Component

action, add, addComponentListener, addFocusListener, addHierarchyBoundsListener, addHierarchyListener, addInputMethodListener, addKeyListener, addMouseListener, addMouseMotionListener, addPropertyChangeListener, addPropertyChangeListener, areInputMethodsEnabled, bounds, checkImage, checkImage, checkWindowClosingException, coalesceEvents, contains, contains, createImage, createImage, disable, disableEvents, dispatchEvent, enable, enable, enableEvents, enableInputMethods, firePropertyChange, getAccessibleIndexInParent, getAccessibleStateSet, getBackground, getBounds, getBounds, getColorModel, getComponentOrientation, getCursor, getDropTarget, getFont_NoClientCode, getFont, getFontMetrics, getForeground, getGraphics, getGraphicsConfiguration, getHeight, getInputContext, getInputMethodRequests, getLocale, getLocation, getLocation, getLocationOnScreen_NoTreeLock, getLocationOnScreen, getName, getNativeContainer, getParent_NoClientCode, getParent, getPeer, getSize, getSize, getToolkit, getToolkitImpl, getTreeLock, getWidth, getWindowForObject, getX, getY, gotFocus, handleEvent, hasFocus, hide, imageUpdate, inside, isDisplayable, isDoubleBuffered, isEnabled, isEnabledImpl, isFocusTraversable, isLightweight, isOpaque, isRecursivelyVisible, isShowing, isValid, isVisible, keyDown, keyUp, list, list, list, location, lostFocus, mouseDown, mouseDrag, mouseEnter, mouseExit, mouseMove, mouseUp, move, nextFocus, paintAll, postEvent, prepareImage, prepareImage, printAll, processComponentEvent, processFocusEvent, processHierarchyBoundsEvent, processHierarchyEvent, processInputMethodEvent, processKeyEvent, processMouseEvent, processMouseMotionEvent, remove, removeComponentListener, removeFocusListener, removeHierarchyBoundsListener, removeHierarchyListener, removeInputMethodListener, removeKeyListener, removeMouseListener, removeMouseMotionListener, removePropertyChangeListener, removePropertyChangeListener, repaint, repaint, repaint, repaint, requestFocus, resetGC, reshape, resize, resize, setBackground, setBounds, setBounds, setComponentOrientation, setCursor, setDropTarget, setEnabled, setForeground, setLocale, setLocation, setLocation, setName, setSize, setSize, setVisible, show, show, size, toString, transferFocus

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, registerNatives, wait, wait, wait

Field Detail

mae

MAExplorer mae

link to global MAExplorer instance

epc

ExprProfileCanvas epc

expression profile canvas we put into panel

Constructor Detail

ExprProfilePanel

ExprProfilePanel(MAExplorer mae,
                 int mid,
                 java.lang.String title,
                 java.awt.Font font,
                 int preferredWidth,
                 int preferredHeight,
                 boolean showKmeansDataFlag,
                 boolean drawLabelsFlag)

ExprProfilePanel() - Constructor to display expression profile in canvas.

 If mid >=0, then display gene info
 If mid==-1, then display "request to click on a gene"
 If mid==-2, then don't draw anything.

Parameters:

mae - is the MAExplorer instance

mid - is the Master Gene Index if not -1

title - is the title for canvas label

font - is the overide labels font if not null

preferredWidth - is the canvas size, 0 to use defaults

preferredHeight -

showKmeansDataFlag - to draw K-means data else use gene data

drawLabelsFlag - if true

See Also:

ExprProfileCanvas

Method Detail

getPreferredSize

public java.awt.Dimension getPreferredSize()

getPreferredSize() - get the preferred size

Overrides:

getPreferredSize in class java.awt.Container

getMinimumSize

public java.awt.Dimension getMinimumSize()

getMinimumSize() - get the minimumpreferred size

Overrides:

getMinimumSize in class java.awt.Container

updateData

boolean updateData(int mid,
                   java.lang.String title,
                   boolean drawLabelsFlag)

updateData() - update expression profile with new gene data if a legal gene MID.

Parameters:

mid - is the Master Gene Index if not -1

title - is the title for canvas label

drawLabelsFlag - if true

See Also:

ExprProfileCanvas.updateData(int, java.lang.String, boolean)

setPlotEPmeansData

void setPlotEPmeansData(int mid,
                        int hpDataNbr,
                        float maxHPdataMn,
                        float[] hpDataMn,
                        float[] hpDataSD,
                        boolean doMeanPlotsFlag)

setPlotEPmeansData() - set expression profile to plot means data.

Parameters:

mid - is the Master Gene Index if not -1

hpDataNbr - is the # HP-E members

maxHPdataMn - is the max value in vector

hpDataMn - is the Mean HP member quant data

hpDataSD - is the S.D. HP member quant data

doMeanPlotsFlag - if true

See Also:

ExprProfileCanvas.setPlotEPmeansData(int, int, float, float[], float[], boolean)

paint

public void paint(java.awt.Graphics g)

paint() - draw the expression profile plot only repaint if a legal gene MID.

Overrides:

paint in class java.awt.Container

Parameters:

g - is graphics context

See Also:

Component.repaint()

mousePressed

public void mousePressed(java.awt.event.MouseEvent e)

mousePressed() - handle mouse Pressed events

Specified by:

mousePressed in interface java.awt.event.MouseListener

Parameters:

is - mouse pressed event

See Also:

Component.repaint()

mouseDragged

public void mouseDragged(java.awt.event.MouseEvent e)

mouseDragged() - just report (HP, Quant) of nearest HP sample near where mouse is

Specified by:

mouseDragged in interface java.awt.event.MouseMotionListener

Parameters:

is - mouse dragged event

See Also:

Component.repaint()

mouseReleased

public void mouseReleased(java.awt.event.MouseEvent e)

mouseReleased() - handle mouse Released events

Specified by:

mouseReleased in interface java.awt.event.MouseListener

Parameters:

is - mouse released event

See Also:

Component.repaint()

mouseClicked

public void mouseClicked(java.awt.event.MouseEvent e)

Specified by:

mouseClicked in interface java.awt.event.MouseListener

mouseMoved

public void mouseMoved(java.awt.event.MouseEvent e)

Specified by:

mouseMoved in interface java.awt.event.MouseMotionListener

mouseEntered

public void mouseEntered(java.awt.event.MouseEvent e)

Specified by:

mouseEntered in interface java.awt.event.MouseListener

mouseExited

public void mouseExited(java.awt.event.MouseEvent e)

Specified by:

mouseExited in interface java.awt.event.MouseListener