Class ShowStringPopup

java.lang.Object
  |
  +--java.awt.Component
        |
        +--java.awt.Container
              |
              +--java.awt.Window
                    |
                    +--java.awt.Frame
                          |
                          +--ShowStringPopup

All Implemented Interfaces:

javax.accessibility.Accessible, java.awt.event.ActionListener, java.util.EventListener, java.awt.image.ImageObserver, java.awt.MenuContainer, java.io.Serializable, java.awt.event.WindowListener

class ShowStringPopup

extends java.awt.Frame

implements java.awt.event.ActionListener, java.awt.event.WindowListener

The class creates and displays a scrollable string text area in a popup window. Various control buttons are also provided at the bottom of the window that are dependent on the type of text area being displayed.

This work was produced by Peter Lemkin of the National Cancer Institute, an agency of the United States Government. As a work of the United States Government there is no associated copyright. It is offered as open source software under the Mozilla Public License (version 1.1) subject to the limitations noted in the accompanying LEGAL file. This notice must be included with the code. The MAExplorer Mozilla and Legal files are available on http://maexplorer.sourceforge.net/.

Version:

$Date: 2003/02/20 14:53:03 $ $Revision: 1.4 $

Author:

P. Lemkin (NCI), G. Thornwall (SAIC), NCI-Frederick, Frederick, MD

See Also:

MAExplorer Home, Serialized Form

Inner classes inherited from class java.awt.Frame

java.awt.Frame.AccessibleAWTFrame

Inner classes inherited from class java.awt.Window

java.awt.Window.AccessibleAWTWindow

Inner classes inherited from class java.awt.Container

java.awt.Container.AccessibleAWTContainer

Inner classes inherited from class java.awt.Component

java.awt.Component.AccessibleAWTComponent, java.awt.Component.AWTTreeLock

Field Summary

(package private) boolean	alertOK Flag: set true if popupName is "ALERT"
private java.awt.Button	allGenesPlotButton multipurpose button that toggles between: "Go 'Cluster gene counts' " for "allGenes" (cluster counts) and "Go 'Cluster single genes'" for "singleGene" (similar genes).
private java.lang.String	defTxtFile
private int	fntSize font size
private MAExplorer	mae link to global MAExplorer nstance
private MenuBarFrame	mbf link to global instance
private int	mode mode of operation used in creating this window.
private int	nCols # of character cols to show
private int	nRows # of character rows to show
private static boolean	OPTIMIZE_WINDOW_WIDTH if optimized window with by shrinking # of buttons/row in controlPanel to OPTIMUM_BUTTONS_PER_ROW
private static int	OPTIMUM_BUTTONS_PER_ROW if optimize # buttons/row
private int	optReportMode Optional Report mode if > 0
(package private) java.lang.String	popupName ARG: name for PopupRegistry
(package private) int	popupPropertyBits ARG: property bits of window for PopupRegistry
private java.awt.Button	saveAsButton "SaveAs" .txt button
(package private) java.lang.String	savedMsg message after Saved Txt into file
private java.awt.TextArea	textarea Text area GUI for main report
private java.lang.String	textReport copy of text in textArea

Fields inherited from class java.awt.Frame

base, CROSSHAIR_CURSOR, DEFAULT_CURSOR, E_RESIZE_CURSOR, frameSerializedDataVersion, HAND_CURSOR, icon, ICONIFIED, mbManagement, menuBar, MOVE_CURSOR, N_RESIZE_CURSOR, nameCounter, NE_RESIZE_CURSOR, NORMAL, NW_RESIZE_CURSOR, ownedWindows, resizable, S_RESIZE_CURSOR, SE_RESIZE_CURSOR, serialVersionUID, state, SW_RESIZE_CURSOR, TEXT_CURSOR, title, W_RESIZE_CURSOR, WAIT_CURSOR, weakThis

Fields inherited from class java.awt.Window

active, dbg, focusMgr, inputContext, inputContextLock, OPENED, ownedWindowList, showWithParent, warningString, windowListener, windowSerializedDataVersion

Fields inherited from class java.awt.Container

component, containerListener, containerSerializedDataVersion, dispatcher, layoutMgr, listeningBoundsChildren, listeningChildren, maxSize, ncomponents, printing, printingThreads

Fields inherited from class java.awt.Component

accessibleContext, actionListenerK, adjustmentListenerK, appContext, background, BOTTOM_ALIGNMENT, CENTER_ALIGNMENT, changeSupport, componentListener, componentListenerK, componentOrientation, componentSerializedDataVersion, containerListenerK, cursor, dropTarget, enabled, eventMask, focusListener, focusListenerK, font, foreground, graphicsConfig, hasFocus, height, hierarchyBoundsListener, hierarchyBoundsListenerK, hierarchyListener, hierarchyListenerK, incRate, inputMethodListener, inputMethodListenerK, isInc, isPacked, itemListenerK, keyListener, keyListenerK, LEFT_ALIGNMENT, locale, LOCK, metrics, minSize, mouseListener, mouseListenerK, mouseMotionListener, mouseMotionListenerK, name, nameExplicitlySet, newEventsOnly, ownedWindowK, parent, peer, peerFont, popups, prefSize, privateKey, RIGHT_ALIGNMENT, textListenerK, TOP_ALIGNMENT, valid, visible, width, windowClosingException, windowListenerK, x, y

Fields inherited from interface java.awt.image.ImageObserver

ABORT, ALLBITS, ERROR, FRAMEBITS, HEIGHT, PROPERTIES, SOMEBITS, WIDTH

Constructor Summary

(package private)

ShowStringPopup(MAExplorer mae, java.lang.String inputStr, int nRows, int nCols, java.lang.String fontSize, java.lang.String title, int optReportMode, int optMode, java.lang.String popupName, int popupPropertyBits, java.lang.String defTxtFile) ShowStringPopup() - Constructor.

Method Summary

void	actionPerformed(java.awt.event.ActionEvent e) actionPerformed() - Handle button clicks
(package private) void	changeGeneButton(java.lang.String newLabel, java.lang.String newCmd, int optReportMode) changeGeneButton() - change gene label
(package private) void	close(boolean keepFlags) close() - close this popup and reset flags if needed
private boolean	saveAsTxtFile(java.lang.String oTxtFileName) saveAsTxtFile() - save textReport data in .txt file oTxtFileName
(package private) void	updateCurGene(int mid) updateCurGene() - update string report if current gene changed and this type of string report requires it.
(package private) void	updateFilter(GeneList ml) updateFilter() - update string report if Filter changed and this type of string report requires it.
(package private) void	updateLabels() updateLabels() - update string report if labels changed and this type of string report requires it.
(package private) void	updateSlider() updateSlider() - update string report if Slider changed and this type of string report requires it.
(package private) void	updateText(java.lang.String textReport) updateText() - update text in popup window
(package private) void	updateTitle(java.lang.String titleMsg) updateTitle() - update popup window title
void	windowActivated(java.awt.event.WindowEvent e)
void	windowClosed(java.awt.event.WindowEvent e)
void	windowClosing(java.awt.event.WindowEvent e) windowClosing() - closing down the window, get rid of the frame.
void	windowDeactivated(java.awt.event.WindowEvent e)
void	windowDeiconified(java.awt.event.WindowEvent e)
void	windowIconified(java.awt.event.WindowEvent e)
void	windowOpened(java.awt.event.WindowEvent e)

Methods inherited from class java.awt.Frame

, addNotify, addToFrameList, constructComponentName, finalize, getAccessibleContext, getCursorType, getFrames, getIconImage, getMenuBar, getState, getTitle, initIDs, isResizable, paramString, postProcessKeyEvent, readObject, remove, removeFromFrameList, removeNotify, setCursor, setIconImage, setMenuBar, setResizable, setState, setTitle, writeObject

Methods inherited from class java.awt.Window

addOwnedWindow, addWindowListener, adjustListeningChildren, applyResourceBundle, applyResourceBundle, connectOwnedWindow, dispatchEventImpl, dispose, eventEnabled, getFocusOwner, getGraphicsConfiguration, getInputContext, getListeners, getLocale, getOwnedWindows, getOwner, getToolkit, getWarningString, hide, isActive, isShowing, nextFocus, ownedInit, pack, postEvent, postWindowEvent, preProcessKeyEvent, processEvent, processWindowEvent, removeOwnedWindow, removeWindowListener, resetGC, setCursor, setFocusOwner, setWarningString, show, toBack, toFront, transferFocus

Methods inherited from class java.awt.Container

add, add, add, add, add, addContainerListener, addImpl, applyOrientation, checkGD, countComponents, createChildHierarchyEvents, createHierarchyEvents, deliverEvent, dispatchEventToSelf, doLayout, findComponentAt, findComponentAt, findComponentAt, getAccessibleAt, getAccessibleChild, getAccessibleChildrenCount, getAlignmentX, getAlignmentY, getComponent, getComponentAt, getComponentAt, getComponentCount, getComponents_NoClientCode, getComponents, getInsets, getLayout, getMaximumSize, getMinimumSize, getMouseEventTarget, getPreferredSize, getWindow, insets, invalidate, invalidateTree, isAncestorOf, layout, lightweightPaint, lightweightPrint, list, list, locate, minimumSize, numListening, paint, paintComponents, paintHeavyweightComponents, postsOldMouseEvents, preferredSize, print, printComponents, printHeavyweightComponents, processContainerEvent, proxyEnableEvents, proxyRequestFocus, remove, remove, removeAll, removeContainerListener, setFont, setLayout, update, validate, validateTree

Methods inherited from class java.awt.Component

action, add, addComponentListener, addFocusListener, addHierarchyBoundsListener, addHierarchyListener, addInputMethodListener, addKeyListener, addMouseListener, addMouseMotionListener, addPropertyChangeListener, addPropertyChangeListener, areInputMethodsEnabled, bounds, checkImage, checkImage, checkWindowClosingException, coalesceEvents, contains, contains, createImage, createImage, disable, disableEvents, dispatchEvent, enable, enable, enableEvents, enableInputMethods, firePropertyChange, getAccessibleIndexInParent, getAccessibleStateSet, getBackground, getBounds, getBounds, getColorModel, getComponentOrientation, getCursor, getDropTarget, getFont_NoClientCode, getFont, getFontMetrics, getForeground, getGraphics, getHeight, getInputMethodRequests, getLocation, getLocation, getLocationOnScreen_NoTreeLock, getLocationOnScreen, getName, getNativeContainer, getParent_NoClientCode, getParent, getPeer, getSize, getSize, getToolkitImpl, getTreeLock, getWidth, getWindowForObject, getX, getY, gotFocus, handleEvent, hasFocus, imageUpdate, inside, isDisplayable, isDoubleBuffered, isEnabled, isEnabledImpl, isFocusTraversable, isLightweight, isOpaque, isRecursivelyVisible, isValid, isVisible, keyDown, keyUp, list, list, list, location, lostFocus, mouseDown, mouseDrag, mouseEnter, mouseExit, mouseMove, mouseUp, move, nextFocus, paintAll, prepareImage, prepareImage, printAll, processComponentEvent, processFocusEvent, processHierarchyBoundsEvent, processHierarchyEvent, processInputMethodEvent, processKeyEvent, processMouseEvent, processMouseMotionEvent, removeComponentListener, removeFocusListener, removeHierarchyBoundsListener, removeHierarchyListener, removeInputMethodListener, removeKeyListener, removeMouseListener, removeMouseMotionListener, removePropertyChangeListener, removePropertyChangeListener, repaint, repaint, repaint, repaint, requestFocus, reshape, resize, resize, setBackground, setBounds, setBounds, setComponentOrientation, setDropTarget, setEnabled, setForeground, setLocale, setLocation, setLocation, setName, setSize, setSize, setVisible, show, size, toString, transferFocus

Methods inherited from class java.lang.Object

clone, equals, getClass, hashCode, notify, notifyAll, registerNatives, wait, wait, wait

Methods inherited from interface java.awt.MenuContainer

getFont, postEvent

Field Detail

mae

private MAExplorer mae

link to global MAExplorer nstance

mbf

private MenuBarFrame mbf

link to global instance

OPTIMIZE_WINDOW_WIDTH

private static final boolean OPTIMIZE_WINDOW_WIDTH

if optimized window with by shrinking # of buttons/row in controlPanel to OPTIMUM_BUTTONS_PER_ROW

OPTIMUM_BUTTONS_PER_ROW

private static final int OPTIMUM_BUTTONS_PER_ROW

if optimize # buttons/row

popupName

java.lang.String popupName

ARG: name for PopupRegistry

popupPropertyBits

int popupPropertyBits

ARG: property bits of window for PopupRegistry

allGenesPlotButton

private java.awt.Button allGenesPlotButton

multipurpose button that toggles between: "Go 'Cluster gene counts' " for "allGenes" (cluster counts) and "Go 'Cluster single genes'" for "singleGene" (similar genes).

saveAsButton

private java.awt.Button saveAsButton

"SaveAs" .txt button

savedMsg

java.lang.String savedMsg

message after Saved Txt into file

textReport

private java.lang.String textReport

copy of text in textArea

defTxtFile

private java.lang.String defTxtFile

textarea

private java.awt.TextArea textarea

Text area GUI for main report

optReportMode

private int optReportMode

Optional Report mode if > 0

fntSize

private int fntSize

font size

nRows

private int nRows

# of character rows to show

nCols

private int nCols

# of character cols to show

alertOK

boolean alertOK

Flag: set true if popupName is "ALERT"

mode

private int mode

mode of operation used in creating this window. Used in how we close the window

Constructor Detail

ShowStringPopup

ShowStringPopup(MAExplorer mae,
                java.lang.String inputStr,
                int nRows,
                int nCols,
                java.lang.String fontSize,
                java.lang.String title,
                int optReportMode,
                int optMode,
                java.lang.String popupName,
                int popupPropertyBits,
                java.lang.String defTxtFile)

ShowStringPopup() - Constructor. Display String in textArea

Parameters:

mae - instance of MAExplorer

inputStr - is initial text string for buffer

nRows - is maximum size of window

nCols, - is maximum size of window

fontSize - is null or "8pt", "10pt", or "12pt"

title -

optReportMode - if not 0, add extra buttons

optMode - save the mode for closing

popupName - for PopupRegistry

popupPropertyBits - for PopupRegistry

String - defTxtFile is default SAVE AS .txt file

See Also:

PopupRegistry.addPopupWindowToReg(ShowPlotPopup, java.lang.String, int), PopupRegistry.removePopupByKey(java.lang.String), Util.cvFontS2I(java.lang.String)

Method Detail

updateText

void updateText(java.lang.String textReport)

updateText() - update text in popup window

Parameters:

textReport - is string to copy into text window

updateTitle

void updateTitle(java.lang.String titleMsg)

updateTitle() - update popup window title

Parameters:

textMsg - is title message

changeGeneButton

void changeGeneButton(java.lang.String newLabel,
                      java.lang.String newCmd,
                      int optReportMode)

changeGeneButton() - change gene label

Parameters:

newLabel - for Gene button

newCmd - to assign to the button

optReportMode - to assign to new command

close

void close(boolean keepFlags)

close() - close this popup and reset flags if needed

Parameters:

keepFlags - will prevent flags from being reset

See Also:

Component.repaint(), PopupRegistry.removePopupByKey(java.lang.String)

actionPerformed

public void actionPerformed(java.awt.event.ActionEvent e)

actionPerformed() - Handle button clicks

Specified by:

actionPerformed in interface java.awt.event.ActionListener

Parameters:

e - is action evet

See Also:

ClusterGenes.saveKmeansClustersAsGeneSets(), ClusterGenes.sortKmeansClusterList(GeneList, GeneList), ClusterGenes.updateKmeansClusters(), GeneBitSet.updateListGeneBitSets(), EventMenu.promptFileName(java.lang.String, java.lang.String, java.lang.String, java.lang.String, java.lang.String, boolean, boolean), EventMenu.setClusterDisplayState(java.awt.CheckboxMenuItem, boolean), FileIO.writeFileToDisk(java.lang.String, java.lang.String), Filter.computeWorkingGeneList(), GeneGeneDist.calcNormGeneVectors(GeneList, int), HierClustNode, PopupRegistry.updateCurGene(int, int, java.lang.Object), Report, ShowExprProfilesPopup, Component.repaint(), ShowPlotPopup, StateScrollers.regenerateScrollers(boolean), Util.rmvFinalSubDirectory(java.lang.String, java.lang.String, boolean), Util.saveCmdHistory(java.lang.String), Util.showMsg(java.lang.String), changeGeneButton(java.lang.String, java.lang.String, int), saveAsTxtFile(java.lang.String)

saveAsTxtFile

private boolean saveAsTxtFile(java.lang.String oTxtFileName)

saveAsTxtFile() - save textReport data in .txt file oTxtFileName

Parameters:

oTxtFileName - is the full path of the file to write

Returns:

true if succeed

windowClosing

public void windowClosing(java.awt.event.WindowEvent e)

windowClosing() - closing down the window, get rid of the frame.

Specified by:

windowClosing in interface java.awt.event.WindowListener

Parameters:

e - is window closing event

See Also:

close(boolean)

windowOpened

public void windowOpened(java.awt.event.WindowEvent e)

Specified by:

windowOpened in interface java.awt.event.WindowListener

windowActivated

public void windowActivated(java.awt.event.WindowEvent e)

Specified by:

windowActivated in interface java.awt.event.WindowListener

windowClosed

public void windowClosed(java.awt.event.WindowEvent e)

Specified by:

windowClosed in interface java.awt.event.WindowListener

windowDeactivated

public void windowDeactivated(java.awt.event.WindowEvent e)

Specified by:

windowDeactivated in interface java.awt.event.WindowListener

windowDeiconified

public void windowDeiconified(java.awt.event.WindowEvent e)

Specified by:

windowDeiconified in interface java.awt.event.WindowListener

windowIconified

public void windowIconified(java.awt.event.WindowEvent e)

Specified by:

windowIconified in interface java.awt.event.WindowListener

updateCurGene

void updateCurGene(int mid)

updateCurGene() - update string report if current gene changed and this type of string report requires it.

Parameters:

mid - is the new Master Gene ID of the current gene

See Also:

Component.repaint()

updateFilter

void updateFilter(GeneList ml)

updateFilter() - update string report if Filter changed and this type of string report requires it.

Parameters:

ml - is the gene list to update now that filter has changed.

updateSlider

void updateSlider()

updateSlider() - update string report if Slider changed and this type of string report requires it.

updateLabels

void updateLabels()

updateLabels() - update string report if labels changed and this type of string report requires it.

See Also:

Component.repaint()