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SUMMARY: INNER | FIELD | CONSTR | METHOD | DETAIL: FIELD | CONSTR | METHOD |
java.lang.Object | +--EventMenu
Event handler class to process menubar Menu selection and menu checkbox events. It contains various other methods used to support the interpretation of these events and support the data structures. Some of these methods will ensure radio-button behavior of the ganged checkbox menu items. It updates global state flags and invokes various methods to perform the operation.
This work was produced by Peter Lemkin of the National Cancer Institute, an agency of the United States Government. As a work of the United States Government there is no associated copyright. It is offered as open source software under the Mozilla Public License (version 1.1) subject to the limitations noted in the accompanying LEGAL file. This notice must be included with the code. The MAExplorer Mozilla and Legal files are available on http://maexplorer.sourceforge.net/.
MenuBarFrame
Field Summary | |
private static Condition |
cdList
link to global Condition instance |
private static Config |
cfg
link to global Config instance |
private static Filter |
fc
link to global Filter instance |
private static GeneClass |
gct
link to global GeneClass instance |
private static MAExplorer |
mae
link to global MAExplorer instance |
private static MenuBarFrame |
mbf
link to global MenuBarFrame instance |
private static java.lang.String |
newDir
new project directory if any if not null |
private static GeneBitSet |
normCLbitSet
link to global instanceof normalization GeneBitSet |
private static java.awt.CheckboxMenuItem |
oldItem
previous array display mode |
private static MaHybridSample |
oldMS
save old value of MaHybridSample mae.ms |
private static PopupCondChooser |
oldPCC
old PopupCondChooser to be closed if open up a new one without closing the first. |
private static int |
oldPlotMode
save old value of mae.plotModeImage |
private static PopupOrderedCondChooser |
oldPOCC
old PopupOrderedCondChooser to be closed if open up a new one without closing the first. |
private static java.lang.String |
promptDir
last prompted directory for popup dialog |
private static java.lang.String |
promptExt
for FilenameFilter file extension for popup dialog |
private static java.lang.String |
promptFile
last prompted file for popup dialog |
private static java.lang.String |
promptProject
last prompted project for popup dialog |
private static PopupRegistry |
pur
link to global PopupRegistry instance |
(package private) static ShowStringPopup |
rloPopup
RLO report popup if it exists |
private static StateScrollers |
stateScr
link to global StateScrollers instance |
private static boolean |
useArgListFlag
processing by eval method not GUI. |
private static Util |
util
link to global Util instance |
private static GeneBitSet |
wkCLbitSet
link to global instance of working GeneBitSet |
private static GeneList |
workingCL
link to global instance of working GeneList |
Constructor Summary | |
(package private) |
EventMenu(MAExplorer mae)
EventMenu() - constructor for event menu instance |
Method Summary | |
boolean |
accept(java.io.File dir,
java.lang.String name)
accept() - filter used to test if file should be in directory list. |
(package private) static boolean |
changeDefSample(int sn,
boolean rmvCmd)
changeDefSample() - switch to new msList[i] hybridized sample list |
(package private) void |
changeProjDir(java.lang.String pName,
java.lang.String pDir)
changeProjDir() - change the project name and path. |
(package private) void |
cleanup()
cleanup() - cleanup global static allocated variables in this class. |
(package private) static boolean |
clearClusterDisplayState(java.awt.CheckboxMenuItem item)
clearClusterDisplayState() - clear cluster display checkbox state. |
static boolean |
handleActions(java.awt.event.ActionEvent e)
handleActions() - handle menu item events (stateless command). |
static void |
handleCheckboxStateChanged(java.awt.event.ItemEvent e)
handleCheckboxStateChanged() - handle check box item state changed events. |
static void |
handleItemStateChanged(java.awt.event.ItemEvent e)
handleItemStateChanged() - handle checkbox menu item state changed events. |
(package private) static boolean |
invokeMenuEntryByName(java.lang.String cmd,
int forceStateFlag)
invokeMenuEntryByName() - process the menu command by name. |
(package private) static boolean |
invokeMenuEntryByName(java.lang.String cmd,
int forceStateFlag,
java.lang.String[] argList)
invokeMenuEntryByName() - process the menu command by name with extra argList. |
(package private) static boolean |
notAvailableYet()
notAvailableYet() - print "Not available yet". |
static void |
openNewMaeDB(java.lang.String optDefDir,
java.lang.String optFileName)
openNewMaeDB() - open new .mae file DB browser & select file. |
private static void |
openNewWebDB(java.lang.String optURL)
openNewWebDB() - open new Web database after closing the old one |
(package private) static boolean |
processActionEventByName(java.lang.String actCmd,
java.lang.String[] argList)
processActionEventByName() - process Menu item events only... |
(package private) static boolean |
processCheckboxMenuItemStateChangedByitem(java.awt.CheckboxMenuItem item,
java.lang.String itemName)
processCheckboxMenuItemStateChangedByitem() - process CheckboxMenuItem state changed events by item. |
(package private) static boolean |
processCheckboxStateChangedByItem(java.awt.Checkbox cbItem,
java.lang.String cbItemName)
processCheckboxStateChangedByItem() - handle checkbox menu item state changed events. |
(package private) static boolean |
processRLO(java.lang.String actCmd)
processRLO() - process the "RLO:RscriptName" actions to invoke the R script |
(package private) static boolean |
processSetHP(java.lang.String actCmd)
processSetHP() - process the "HP_xxx:sample" actions to modify the HP-X, HP-Y, and HP-E lists and current sample. |
(package private) static java.lang.String |
promptFileName(java.lang.String msg,
java.lang.String useDir,
java.lang.String initialFile,
java.lang.String subDir,
java.lang.String fileExt,
boolean saveMode,
boolean useFileDialog)
promptFileName() - dialog prompt for file name. |
private static void |
promptSaveAsMaeDB(boolean alwaysSaveFlag,
boolean saveAllsamplesFlag)
promptSaveAsMaeDB() - prompt SaveAs current .mae DB Optionally: |
(package private) static boolean |
setClusterDisplayState(java.awt.CheckboxMenuItem item,
boolean defaultFlag)
setClusterDisplayState() - set the cluster display checkbox state. |
private static void |
setCVmodeState(java.awt.CheckboxMenuItem item)
setCVmodeState() - set theCV mode checkbox state. |
private static void |
setCy3Cy5RatioRangeState(java.awt.CheckboxMenuItem item)
setCy3Cy5RatioRangeState() - set the Cy3/Cy5 Ratio Range checkbox state. |
private static void |
setDetValueSpotModeState(java.awt.CheckboxMenuItem item)
setDetValueSpotModeState() - set the Spot detection value data mode checkbox state. |
private static void |
setEditState(java.awt.CheckboxMenuItem item)
setEditState() - set the edit checkbox state. |
private static void |
setGoodSpotModeState(java.awt.CheckboxMenuItem item)
setGoodSpotModeState() - set the Good Spot data mode checkbox state. |
(package private) static void |
setIntensityCompareModeSlider(int newCompareMode)
setIntensityCompareModeSlider() - set intensity compare mode Percent SI slider |
private static void |
setIntensityRangeState(java.awt.CheckboxMenuItem item)
setIntensityRangeState() - set the Intensity Range checkbox state. |
private static boolean |
setNormalizationState(java.awt.CheckboxMenuItem item,
java.lang.String methodName)
setNormalizationState() - set the normalization checkbox state. |
(package private) static void |
setNormalizationStateFromPlugin(java.lang.String normMethodName)
setNormalizationStateFromPlugin() - set normalization state from MAEPlugin |
(package private) static void |
setPlotState(java.awt.CheckboxMenuItem item)
setPlotState() - set the Plot checkbox state. |
private static void |
setPosQuantModeState(java.awt.CheckboxMenuItem item)
setPosQuantModeState() - set the Postive Quant data mode checkbox state. |
private static void |
setRatioRangeState(java.awt.CheckboxMenuItem item)
setRatioRangeState() - set the Ratio Range checkbox state. |
private static void |
setReportFontSizeState(java.awt.CheckboxMenuItem item)
setReportFontSizeState() - set the Report Font Size checkbox state. |
private static void |
setReportFormatState(java.awt.CheckboxMenuItem item)
setReportFormatState() - set the Report Format checkbox state. |
private static void |
setSIcompareModeState(java.awt.CheckboxMenuItem item)
setSIcompareModeState() - set the spot intensity compare mode checkbox state. |
private static void |
setSImodeState(java.awt.CheckboxMenuItem item)
setSImodeState() - set the spot intensity mode checkbox state. |
private static void |
setSIrangeState(java.awt.CheckboxMenuItem item)
setSIrangeState() - set the spot intensity Range checkbox state. |
(package private) static boolean |
setViewerDisplayState(java.awt.CheckboxMenuItem item,
java.lang.String genomicDB)
setViewerDisplayState() - set the viewer display checkbox state. |
(package private) static void |
setZscoreNormalizationState()
setZscoreNormalizationState() - set Zscore normalization state and adjust sliders if required. |
(package private) static void |
showCurrentRplots()
showCurrentRplots() - show plots generated if any with last R eval. |
Methods inherited from class java.lang.Object |
|
Field Detail |
private static MAExplorer mae
private static MenuBarFrame mbf
private static Filter fc
private static GeneClass gct
private static Condition cdList
private static Config cfg
private static PopupRegistry pur
private static StateScrollers stateScr
private static Util util
private static java.lang.String newDir
private static java.lang.String promptFile
private static java.lang.String promptDir
private static java.lang.String promptProject
private static java.lang.String promptExt
private static GeneList workingCL
private static GeneBitSet normCLbitSet
private static GeneBitSet wkCLbitSet
private static int oldPlotMode
private static MaHybridSample oldMS
private static java.awt.CheckboxMenuItem oldItem
private static boolean useArgListFlag
private static PopupCondChooser oldPCC
private static PopupOrderedCondChooser oldPOCC
static ShowStringPopup rloPopup
Constructor Detail |
EventMenu(MAExplorer mae)
mae
- is the MAExplorer instanceMethod Detail |
static void setPlotState(java.awt.CheckboxMenuItem item)
item
- is a CheckboxMenuItem item for this radio groupprivate static void setEditState(java.awt.CheckboxMenuItem item)
item
- is a CheckboxMenuItem item for this radio groupprivate static void setSIrangeState(java.awt.CheckboxMenuItem item)
item
- is a CheckboxMenuItem item for this radio groupFilter.computeWorkingGeneList()
private static void setIntensityRangeState(java.awt.CheckboxMenuItem item)
item
- is a CheckboxMenuItem item for this radio groupFilter.computeWorkingGeneList()
private static void setRatioRangeState(java.awt.CheckboxMenuItem item)
item
- is a CheckboxMenuItem item for this radio groupFilter.computeWorkingGeneList()
private static void setCy3Cy5RatioRangeState(java.awt.CheckboxMenuItem item)
item
- is a CheckboxMenuItem item for this radio groupFilter.computeWorkingGeneList()
private static void setSImodeState(java.awt.CheckboxMenuItem item)
item
- is a CheckboxMenuItem item for this radio groupFilter.computeWorkingGeneList()
private static void setSIcompareModeState(java.awt.CheckboxMenuItem item)
item
- is a CheckboxMenuItem item for this radio groupFilter.computeWorkingGeneList()
,
StateScrollers.regenerateScrollers(boolean)
private static void setCVmodeState(java.awt.CheckboxMenuItem item)
item
- is a CheckboxMenuItem item for this radio groupFilter.computeWorkingGeneList()
private static void setPosQuantModeState(java.awt.CheckboxMenuItem item)
item
- is a CheckboxMenuItem item for this radio groupFilter.computeWorkingGeneList()
private static void setGoodSpotModeState(java.awt.CheckboxMenuItem item)
item
- is a CheckboxMenuItem item for this radio groupFilter.computeWorkingGeneList()
private static void setDetValueSpotModeState(java.awt.CheckboxMenuItem item)
item
- is a CheckboxMenuItem item for this radio groupFilter.computeWorkingGeneList()
private static void setReportFormatState(java.awt.CheckboxMenuItem item)
item
- is a CheckboxMenuItem item for this radio groupprivate static void setReportFontSizeState(java.awt.CheckboxMenuItem item)
item
- is a CheckboxMenuItem item for this radio groupstatic boolean setViewerDisplayState(java.awt.CheckboxMenuItem item, java.lang.String genomicDB)
item
- is a CheckboxMenuItem item for this radio groupgenomicDB
- is name of the genomic DB for use in msgUtil.saveCmdHistory(java.lang.String)
static boolean setClusterDisplayState(java.awt.CheckboxMenuItem item, boolean defaultFlag)
item
- is the checkbox menu item to set if not null.defaultFlag
- is value to set if checkbox was not selected.ClusterGenes.removePreviousClusterMethod(int)
static boolean clearClusterDisplayState(java.awt.CheckboxMenuItem item)
item
- is the cluster checkbox menu item to set if not null.static void setIntensityCompareModeSlider(int newCompareMode)
newCompareMode
- static void setZscoreNormalizationState()
static void setNormalizationStateFromPlugin(java.lang.String normMethodName)
normMethodName
- to be specifiedsetNormalizationState(java.awt.CheckboxMenuItem, java.lang.String)
private static boolean setNormalizationState(java.awt.CheckboxMenuItem item, java.lang.String methodName)
item
- is a CheckboxMenuItem item for this radio groupmethodName
- is name of new normalization methodMaeJavaAPI.getNormalizationState()
,
MaeJavaAPI.setNormalizationState(boolean)
,
Util.saveCmdHistory(java.lang.String)
static boolean changeDefSample(int sn, boolean rmvCmd)
sn
- is the index in the snxxx[] listrmvCmd
- remove sample else add sampleArrayScroller.syncScrollerAccess()
,
MaHybridSample
,
Util.showMsg3(java.lang.String)
static boolean processRLO(java.lang.String actCmd)
actCmd
- is the action command to process#makeMenuItem
,
#makeSubMenu
static void showCurrentRplots()
MJAReval#getCurrentRLO
,
MJAReval.getOutputDataFileNames()
,
MJAReval.getOutputDataTypes()
,
MJAReval.getReportBasePath()
,
MJAUtil#displayPDF
,
MJAUtil#displayURL
,
#appendReport
,
#showGuiMsg
static boolean processSetHP(java.lang.String actCmd)
actCmd
- is the action command to processFilter.computeWorkingGeneList()
,
HPxyData.setupDataStruct(boolean)
,
MenuBarFrame.setHP_XYlabels()
,
Component.repaint()
,
SampleSets.addHPtoXset(MaHybridSample)
,
SampleSets.addHPtoYset(MaHybridSample)
,
SampleSets.addHPtoElist(MaHybridSample)
,
SampleSets.rmvHPfromXset(MaHybridSample)
,
SampleSets.rmvHPfromYset(MaHybridSample)
,
SampleSets.rmvHPfromElist(MaHybridSample)
,
Util.showMsg(java.lang.String)
,
Util.saveCmdHistory(java.lang.String)
,
changeDefSample(int, boolean)
public boolean accept(java.io.File dir, java.lang.String name)
accept
in interface java.io.FilenameFilter
dir
- is the file directoryname
- is the name of the filestatic java.lang.String promptFileName(java.lang.String msg, java.lang.String useDir, java.lang.String initialFile, java.lang.String subDir, java.lang.String fileExt, boolean saveMode, boolean useFileDialog)
msg
- is the prompt msguseDir
- is the opt. dir to useinitialFile
- is the opt. initial filesubDir
- is theopt. subdir to usefileExt
- is the file extensionsaveMode
- is the mode. Save if true else openuseFileDialog
- if true else query dialogPopupDialogQuery.dialogQuery(java.lang.String, int)
static boolean notAvailableYet()
Util.showMsg(java.lang.String)
void changeProjDir(java.lang.String pName, java.lang.String pDir)
pName
- is the name of the project directorypdir
- is the project directoryPopupProjDirGuesser.done(java.lang.String)
,
Util.saveCmdHistory(java.lang.String)
,
Util.showMsg(java.lang.String)
,
Util.showMsg2(java.lang.String)
,
Util.showMsg3(java.lang.String)
,
openNewMaeDB(java.lang.String, java.lang.String)
,
openNewWebDB(java.lang.String)
private static void promptSaveAsMaeDB(boolean alwaysSaveFlag, boolean saveAllsamplesFlag)
1. prompt if should save 2. prompt for SaveAs name.
alwaysSaveFlag
- always save and don't prompt firstsaveAllsamplesFlag
- save all samples, else just save the samples
in the HP-X, HP-Y 'sets' and HP-E 'list'PopupDialogQuery.dialogQuery(java.lang.String, int)
,
UserState.writeMAEstartupFile(java.lang.String, java.lang.String, boolean)
public static void openNewMaeDB(java.lang.String optDefDir, java.lang.String optFileName)
dbMAEdir
- - full path of the new database MAE/ 'project' directory.
E.g. "C:/user/test/MAE/" (with appropriate delimiters for the OS you are using).maeFilename
- - name of the .mae startup file to be started
E.g. "Start.mae"MAExplorer.start()
,
MAExplorer.init()
,
MAExplorer.stop()
,
SimpleTable.lookupFieldIdx(java.lang.String)
,
UserState.readMAEstartupFile(java.lang.String, java.lang.String)
,
Util.showMsg(java.lang.String)
,
promptSaveAsMaeDB(boolean, boolean)
,
promptFileName(java.lang.String, java.lang.String, java.lang.String, java.lang.String, java.lang.String, boolean, boolean)
private static void openNewWebDB(java.lang.String optURL)
optURL
- - optional URL to usePopupDialogQuery.dialogQuery(java.lang.String, int)
,
MenuBarFrame.enableMenus(java.lang.String)
,
Component.repaint()
,
MAExplorer.start()
,
MAExplorer.init()
,
MAExplorer.stop()
,
notAvailableYet()
static boolean invokeMenuEntryByName(java.lang.String cmd, int forceStateFlag)
cmd
- to be evaluated (exact spelling)forceStateFlag
- (optional) is set to 1 for true, 0 for false if force
a checkbox state otherwise the checkbox state is toggled.processActionEventByName(java.lang.String, java.lang.String[])
,
processCheckboxMenuItemStateChangedByitem(java.awt.CheckboxMenuItem, java.lang.String)
,
processCheckboxStateChangedByItem(java.awt.Checkbox, java.lang.String)
static boolean invokeMenuEntryByName(java.lang.String cmd, int forceStateFlag, java.lang.String[] argList)
cmd
- to be evaluated (exact spelling)forceStateFlag
- (optional) is set to 1 for true, 0 for false if force
a checkbox state otherwise the checkbox state is toggled.argList
- is an optional (if not null) arglist that can be used to supply
arguments to various commands (eg. file names or database names etc).processActionEventByName(java.lang.String, java.lang.String[])
,
processCheckboxMenuItemStateChangedByitem(java.awt.CheckboxMenuItem, java.lang.String)
,
processCheckboxStateChangedByItem(java.awt.Checkbox, java.lang.String)
public static boolean handleActions(java.awt.event.ActionEvent e)
e
- is menu item eventprocessActionEventByName(java.lang.String, java.lang.String[])
public static void handleCheckboxStateChanged(java.awt.event.ItemEvent e)
e
- is menu checkbox item eventfor (cbItem, cbName)
so you can invoke commands via a client-server plugin.
,
processCheckboxStateChangedByItem(java.awt.Checkbox, java.lang.String)
public static void handleItemStateChanged(java.awt.event.ItemEvent e)
processCheckboxMenuItemStateChangedByitem(java.awt.CheckboxMenuItem, java.lang.String)
static boolean processActionEventByName(java.lang.String actCmd, java.lang.String[] argList)
actCmd
- is the menu item action command to processargList
- is an optional (if not null) arglist that can be used to supply
arguments to various commands (eg. file names or database names etc).CompositeDatabase.recalcNorms(java.lang.String, boolean)
,
Condition.addCondList(java.lang.String, MaHybridSample[], int, int)
,
Condition.difference(Condition, Condition, java.lang.String)
,
Condition.getCondListLength()
,
Condition.getConditionByName(java.lang.String)
,
Condition.getHPlist()
,
Condition.intersection(Condition, Condition, java.lang.String)
,
Condition.listCondLists()
,
Condition.rmvCondList(java.lang.String, boolean, boolean)
,
Condition.renameCondList(java.lang.String, java.lang.String, boolean)
,
Condition.updateListCondLists()
,
Condition.union(Condition, Condition, java.lang.String)
,
ExprProfilePopup
,
Filter.computeWorkingGeneList()
,
GeneBitSet.assignCLtoUserBS(java.lang.String, GeneList)
,
GeneBitSet.getGBSnames()
,
GeneBitSet.lookupGeneSetByName(java.lang.String, boolean)
,
GeneBitSet.listGeneBitSets(java.lang.String)
,
GeneBitSet.removeUserBS(java.lang.String)
,
GeneBitSet.updateListGeneBitSets()
,
GeneBitSet.useGeneSetBS(GeneList, java.lang.String, java.lang.String)
,
GeneClass.setCurrentGeneClassName(java.lang.String)
,
GeneList.clear()
,
MAExplorer.logDRYROTerr(java.lang.String)
,
MAExplorer.resetImageAndState()
,
Component.repaint()
,
Frame.setTitle(java.lang.String)
,
PopupDialogQuery.dialogQuery(java.lang.String, int)
,
PopupBinOprDialogQuery.dialogQuery(java.lang.String, java.lang.String, java.lang.String, java.lang.String, java.lang.String, java.lang.String, java.lang.String)
,
PopupHPChooser
,
PopupHPmenuGuesser
,
PopupProjDirGuesser
,
PopupRegistry.updateFilter(GeneList)
,
Report
,
SampleSets.showHP_XY_assignmentsPopup()
,
SampleSets.showHP_E_assignmentsPopup()
,
SampleSets.changeHPswapCy5Cy3Samples()
,
ScrollableImageCanvas.drawGifFile(java.lang.String)
,
ShowExprProfilesPopup
,
ShowPlotPopup
,
StateScrollers.regenerateScrollers(boolean)
,
Table
,
UserState.doLogin(java.lang.String, boolean)
,
UserState.openState(java.lang.String)
,
UserState.openOtherUserState(java.lang.String, java.lang.String)
,
UserState.readUserGeneSet(java.lang.String, java.lang.String)
,
UserState.saveStateFile(java.lang.String, java.lang.String, java.lang.String)
,
UserState.shareUserState(java.lang.String, java.lang.String, java.lang.String)
,
UserState.updateMAEprojectDB(java.lang.String, java.lang.String, java.lang.String, java.lang.String)
,
UserState.writeMAEstartupFile(java.lang.String, java.lang.String, boolean)
,
Util.popupViewer(java.net.URL, java.lang.String, java.lang.String)
,
Util.rmvFinalSubDirectory(java.lang.String, java.lang.String, boolean)
,
Util.saveCmdHistory(java.lang.String)
,
Util.showMsg(java.lang.String)
,
Util.showMsg2(java.lang.String)
,
Util.showMsg3(java.lang.String)
,
Util.showFeatures(java.lang.String, java.lang.String)
,
Util.chkDirFinalSeparator(java.lang.String, java.lang.String)
,
notAvailableYet()
,
openNewMaeDB(java.lang.String, java.lang.String)
,
openNewWebDB(java.lang.String)
,
promptFileName(java.lang.String, java.lang.String, java.lang.String, java.lang.String, java.lang.String, boolean, boolean)
,
promptSaveAsMaeDB(boolean, boolean)
,
processSetHP(java.lang.String)
static boolean processCheckboxStateChangedByItem(java.awt.Checkbox cbItem, java.lang.String cbItemName)
item
- is the check box item to processitemName
- is the associated name for debugging purposesUtil.showMsg(java.lang.String)
,
Util.showMsg2(java.lang.String)
,
Util.showFeatures(java.lang.String, java.lang.String)
static boolean processCheckboxMenuItemStateChangedByitem(java.awt.CheckboxMenuItem item, java.lang.String itemName)
item
- is the check box menu item to processitemName
- is the associated name for debugging purposeClusterGenes
,
CompositeDatabase.recalcNorms(java.lang.String, boolean)
,
CompositeDatabase.recalcGlobalStats(boolean)
,
Filter.computeWorkingGeneList()
,
HPxyData.setupDataStruct(boolean)
,
MAExplorer.chkIfCache()
,
Component.repaint()
,
MenuBarFrame.setHP_XYlabels()
,
PopupRegistry.updateCurGene(int, int, java.lang.Object)
,
PopupRegistry.updateFilter(GeneList)
,
StateScrollers.regenerateScrollers(boolean)
,
Table.lookupFieldIdxAndRemapFieldName(java.lang.String, java.lang.String)
,
ShowStringPopup
,
Util.setLogMsgWindowVisible(boolean)
,
Util.setLogHistoryWindowVisible(boolean)
,
Util.showMsg(java.lang.String)
,
Util.showMsg2(java.lang.String)
,
Util.showMsg3(java.lang.String)
,
Util.saveCmdHistory(java.lang.String)
,
setClusterDisplayState(java.awt.CheckboxMenuItem, boolean)
,
setCVmodeState(java.awt.CheckboxMenuItem)
,
setCy3Cy5RatioRangeState(java.awt.CheckboxMenuItem)
,
setEditState(java.awt.CheckboxMenuItem)
,
setGoodSpotModeState(java.awt.CheckboxMenuItem)
,
setIntensityRangeState(java.awt.CheckboxMenuItem)
,
setNormalizationState(java.awt.CheckboxMenuItem, java.lang.String)
,
setPlotState(java.awt.CheckboxMenuItem)
,
setRatioRangeState(java.awt.CheckboxMenuItem)
,
setReportFontSizeState(java.awt.CheckboxMenuItem)
,
setReportFontSizeState(java.awt.CheckboxMenuItem)
,
setSIrangeState(java.awt.CheckboxMenuItem)
,
setSImodeState(java.awt.CheckboxMenuItem)
,
setSIcompareModeState(java.awt.CheckboxMenuItem)
,
setViewerDisplayState(java.awt.CheckboxMenuItem, java.lang.String)
void cleanup()
|
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SUMMARY: INNER | FIELD | CONSTR | METHOD | DETAIL: FIELD | CONSTR | METHOD |