Class DrawScatterPlot

java.lang.Object
  |
  +--java.awt.Component
        |
        +--java.awt.Canvas
              |
              +--Draw2Dplot
                    |
                    +--DrawScatterPlot

All Implemented Interfaces:

javax.accessibility.Accessible, java.util.EventListener, java.awt.image.ImageObserver, java.awt.MenuContainer, java.awt.event.MouseListener, java.awt.event.MouseMotionListener, java.io.Serializable

class DrawScatterPlot

extends Draw2Dplot

Class to draw scatter plot in an extended Draw2Dplot canvas. It is updated by the PopupRegistry when the normalization, current gene, Filter.workingCL, or other state values change.

This work was produced by Peter Lemkin of the National Cancer Institute, an agency of the United States Government. As a work of the United States Government there is no associated copyright. It is offered as open source software under the Mozilla Public License (version 1.1) subject to the limitations noted in the accompanying LEGAL file. This notice must be included with the code. The MAExplorer Mozilla and Legal files are available on http://maexplorer.sourceforge.net/.

Version:

$Date: 2003/07/07 21:40:41 $ $Revision: 1.11 $

Author:

P. Lemkin (NCI), G.g Thornwall (SAIC), NCI-Frederick, Frederick, MD

See Also:

MAExplorer Home, Draw2Dplot, ShowPlotPopup, Serialized Form

Inner classes inherited from class java.awt.Canvas

java.awt.Canvas.AccessibleAWTCanvas

Inner classes inherited from class java.awt.Component

java.awt.Component.AccessibleAWTComponent, java.awt.Component.AWTTreeLock

Field Summary

private CompositeDatabase	cdb link to global instance
private MAExplorer	mae link to global instance
private Maps	map link to global instance
private MaHybridSample	ms link to global instance
private int	plotMode plot mode of scatter plot
private int	prevBestMID MID closest to point click on
private ShowPlotPopup	spp parent window

Fields inherited from class Draw2Dplot

aText, aTextOrig, cvPrecision, cx1, cx2, cy1, cy2, dispCL, draw180lineFlag, draw45lineFlag, drawIntoImageFlag, epov, eventHandlerCL, fc, fontReg, gScatterPlot, horizCaption, iFontHdrSize, iFontSize, iHeight, info1, info2, info3, info4, iWidth, jGrpList, logScalingFlag, mapPntToMid, maxLineList, maxX, maxXscroll, maxY, maxYscroll, MIN_CANVAS_HEIGHT, MIN_CANVAS_WIDTH, minX, minXscroll, minY, minYscroll, nLineGroup, nList, nPointsPlotted, oGifFileName, olmap, plotMode2D, preferredHeight, preferredWidth, propList, scaleX, scaleY, showNonFilteredGenesFlag, TARGET_SIZE, title, title1, title2, title3, topTitle, useXaxisIntNbrFlag, vertCaption, vx1, vx2, vy1, vy2, xBase, xDataScatterPlot, xLineList, xList, xPlotted, xPnt, xScale, xText, yBase, yDataScatterPlot, yLineList, yList, yPlotted, yPnt, yScale, yText

Fields inherited from class java.awt.Canvas

base, nameCounter, serialVersionUID

Fields inherited from class java.awt.Component

accessibleContext, actionListenerK, adjustmentListenerK, appContext, background, BOTTOM_ALIGNMENT, CENTER_ALIGNMENT, changeSupport, componentListener, componentListenerK, componentOrientation, componentSerializedDataVersion, containerListenerK, cursor, dbg, dropTarget, enabled, eventMask, focusListener, focusListenerK, font, foreground, graphicsConfig, hasFocus, height, hierarchyBoundsListener, hierarchyBoundsListenerK, hierarchyListener, hierarchyListenerK, incRate, inputMethodListener, inputMethodListenerK, isInc, isPacked, itemListenerK, keyListener, keyListenerK, LEFT_ALIGNMENT, locale, LOCK, metrics, minSize, mouseListener, mouseListenerK, mouseMotionListener, mouseMotionListenerK, name, nameExplicitlySet, newEventsOnly, ownedWindowK, parent, peer, peerFont, popups, prefSize, privateKey, RIGHT_ALIGNMENT, textListenerK, TOP_ALIGNMENT, valid, visible, width, windowClosingException, windowListenerK, x, y

Fields inherited from interface java.awt.image.ImageObserver

ABORT, ALLBITS, ERROR, FRAMEBITS, HEIGHT, PROPERTIES, SOMEBITS, WIDTH

Constructor Summary

(package private)

DrawScatterPlot(MAExplorer mae, ShowPlotPopup spp, int plotMode) DrawScatterPlot() - constructor to create scatter plot

Method Summary

(package private) boolean	drawGifFile(java.lang.String oGifFileName) drawGifFile() - draw plot into Gif image file if in standalone mode.
(package private) void	drawScatterPlot() drawScatterPlot() - draw scatter plot (repeatedly) of Filter data
void	mouseHandler(int x, int y, int mouseKeyMods, boolean setCurGeneFlag) mouseHandler() - interact with current plot if a graphic plot.
(package private) void	setCurGene(int mid) setCurGene() - set current gene and update data in displays
(package private) void	showGeneMsgsAndPlot(int mid) showGeneMsgsAndPlot() - show quant&NCBI data messages in MSG and in plot
(package private) void	showGeneOfInterest(int mid, int mouseKeyMods, boolean setCurGeneFlag) showGeneOfInterest() - show quant&NCBI data if click on a point in plot
(package private) void	updateScatterPlot() updateScatterPlot() - refresh scatter plot Note: prevBestMID could be -1 or -2.

Methods inherited from class Draw2Dplot

clipCodeViewport, clipViewport, draw2Dplot, drawCircle, drawFilledColoredCircle, drawFilledGrayCircle, drawNamedOverlayMaps, drawPlus, drawRectangleBin, drawSquare, getMinimumSize, getPreferredSize, mouseClicked, mouseDragged, mouseEntered, mouseExited, mouseMoved, mousePressed, mouseReleased, paint, set2DplotSubtitles, setDataToClip, setFontsFromState, setViewport, update2Dplot, updateScaling, updateScrolledRegion

Methods inherited from class java.awt.Canvas

, addNotify, constructComponentName, getAccessibleContext, postsOldMouseEvents

Methods inherited from class java.awt.Component

action, add, addComponentListener, addFocusListener, addHierarchyBoundsListener, addHierarchyListener, addInputMethodListener, addKeyListener, addMouseListener, addMouseMotionListener, addPropertyChangeListener, addPropertyChangeListener, areInputMethodsEnabled, bounds, checkGD, checkImage, checkImage, checkWindowClosingException, coalesceEvents, contains, contains, createChildHierarchyEvents, createHierarchyEvents, createImage, createImage, deliverEvent, disable, disableEvents, dispatchEvent, dispatchEventImpl, doLayout, enable, enable, enableEvents, enableInputMethods, eventEnabled, firePropertyChange, getAccessibleIndexInParent, getAccessibleStateSet, getAlignmentX, getAlignmentY, getBackground, getBounds, getBounds, getColorModel, getComponentAt, getComponentAt, getComponentOrientation, getCursor, getDropTarget, getFont_NoClientCode, getFont, getFontMetrics, getForeground, getGraphics, getGraphicsConfiguration, getHeight, getInputContext, getInputMethodRequests, getListeners, getLocale, getLocation, getLocation, getLocationOnScreen_NoTreeLock, getLocationOnScreen, getMaximumSize, getName, getNativeContainer, getParent_NoClientCode, getParent, getPeer, getSize, getSize, getToolkit, getToolkitImpl, getTreeLock, getWidth, getWindowForObject, getX, getY, gotFocus, handleEvent, hasFocus, hide, imageUpdate, initIDs, inside, invalidate, isDisplayable, isDoubleBuffered, isEnabled, isEnabledImpl, isFocusTraversable, isLightweight, isOpaque, isRecursivelyVisible, isShowing, isValid, isVisible, keyDown, keyUp, layout, lightweightPaint, lightweightPrint, list, list, list, list, list, locate, location, lostFocus, minimumSize, mouseDown, mouseDrag, mouseEnter, mouseExit, mouseMove, mouseUp, move, nextFocus, numListening, paintAll, paintHeavyweightComponents, paramString, postEvent, preferredSize, prepareImage, prepareImage, print, printAll, printHeavyweightComponents, processComponentEvent, processEvent, processFocusEvent, processHierarchyBoundsEvent, processHierarchyEvent, processInputMethodEvent, processKeyEvent, processMouseEvent, processMouseMotionEvent, readObject, remove, removeComponentListener, removeFocusListener, removeHierarchyBoundsListener, removeHierarchyListener, removeInputMethodListener, removeKeyListener, removeMouseListener, removeMouseMotionListener, removeNotify, removePropertyChangeListener, removePropertyChangeListener, repaint, repaint, repaint, repaint, requestFocus, resetGC, reshape, resize, resize, setBackground, setBounds, setBounds, setComponentOrientation, setCursor, setDropTarget, setEnabled, setFont, setForeground, setLocale, setLocation, setLocation, setName, setSize, setSize, setVisible, show, show, size, toString, transferFocus, update, validate, writeObject

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, registerNatives, wait, wait, wait

Field Detail

mae

private MAExplorer mae

link to global instance

ms

private MaHybridSample ms

link to global instance

map

private Maps map

link to global instance

cdb

private CompositeDatabase cdb

link to global instance

plotMode

private int plotMode

plot mode of scatter plot

spp

private ShowPlotPopup spp

parent window

prevBestMID

private int prevBestMID

MID closest to point click on

Constructor Detail

DrawScatterPlot

DrawScatterPlot(MAExplorer mae,
                ShowPlotPopup spp,
                int plotMode)

DrawScatterPlot() - constructor to create scatter plot

Parameters:

mae - is the MAExplorer instance

spp - is the ShowPlotPopup instance

plotMode - is the specific plot mode to implement

See Also:

drawScatterPlot()

Method Detail

updateScatterPlot

void updateScatterPlot()

updateScatterPlot() - refresh scatter plot Note: prevBestMID could be -1 or -2.

See Also:

drawScatterPlot(), showGeneMsgsAndPlot(int)

drawGifFile

boolean drawGifFile(java.lang.String oGifFileName)

drawGifFile() - draw plot into Gif image file if in standalone mode. This sets it up and lets paint() to the heavy lifting... Returns false if unable to generate the image file.

Parameters:

oGifFileName - is the full path GIF output file

Returns:

true if successful

See Also:

Component.repaint()

drawScatterPlot

void drawScatterPlot()

drawScatterPlot() - draw scatter plot (repeatedly) of Filter data

See Also:

CompositeDatabase.getNormHP_XandYdata(float[], float[], int[], GeneList, MaHybridSample, MaHybridSample, boolean, boolean), MathMAE.calcXYstat(int, float[], float[], int[], java.lang.String, java.lang.String), MaHybridSample.getF1F2Data(float[], float[], int[], GeneList, boolean, boolean, boolean), MenuBarFrame.setHP_XYlabels(), SampleSets.setHPxyModStrings(), Util.showMsg(java.lang.String), Util.showMsg2(java.lang.String), Draw2Dplot.update2Dplot(java.lang.String, java.lang.String, java.lang.String, java.lang.String, java.lang.String, java.lang.String, java.lang.String, java.lang.String, int, int, double, double, double, double, double, double, boolean, boolean, float[], float[], int[], GeneList, int, int[])

setCurGene

void setCurGene(int mid)

setCurGene() - set current gene and update data in displays

Parameters:

mid - is the new Master Gene ID of the current gene

See Also:

CompositeDatabase.setObjCoordFromMID(int, java.lang.Object), showGeneMsgsAndPlot(int)

showGeneMsgsAndPlot

void showGeneMsgsAndPlot(int mid)

showGeneMsgsAndPlot() - show quant&NCBI data messages in MSG and in plot

Parameters:

mid - is the Master Gene Index if not -1

See Also:

GridCoords.cvtGID2str(int, boolean), MaHybridSample.getSpotDataStatic(int, boolean), SpotFeatures.getSpotFeatures(java.awt.Point, MaHybridSample), SpotFeatures.getSpotGenomicData(java.awt.Point, MaHybridSample), Util.cvf2s(float, int), Util.showMsg(java.lang.String), Util.showFeatures(java.lang.String, java.lang.String), Draw2Dplot.set2DplotSubtitles(java.lang.String, java.lang.String, java.lang.String, java.lang.String)

showGeneOfInterest

void showGeneOfInterest(int mid,
                        int mouseKeyMods,
                        boolean setCurGeneFlag)

showGeneOfInterest() - show quant&NCBI data if click on a point in plot

Parameters:

mid - is the Master Gene Index if not -1

mouseKeyMods - is Shift/Control key modifiers

setCurGeneFlag - if true

See Also:

PopupRegistry.updateCurGene(int, int, java.lang.Object), Component.repaint(), setCurGene(int), showGeneMsgsAndPlot(int)

mouseHandler

public void mouseHandler(int x,
                         int y,
                         int mouseKeyMods,
                         boolean setCurGeneFlag)

mouseHandler() - interact with current plot if a graphic plot. If get a hit, then display data for the gene. Note: because the plot lives in the ScrollerImageCanvas, there is only ONE plot so can't get into trouble with multiple plots.

Parameters:

x - is mouse x coordinate

y - is mouse y coordinate

mouseKeyMods - is Shift/Control key modifiers

setCurGeneFlag - if true

See Also:

Component.repaint(), Draw2Dplot.set2DplotSubtitles(java.lang.String, java.lang.String, java.lang.String, java.lang.String), showGeneOfInterest(int, int, boolean)