Uses of Class
RLO

Packages that use RLO

Uses of RLO in

Fields in declared as RLO

(package private) static RLO[]	RevalBase.analyses List [0:nAnalyses-1] of R analysis procedures descriptions
(package private) RLO	RevalBase.rlo instance of the RLO database.

Methods in that return RLO

(package private) RLO	RevalBase.getCurrentRLO() getCurrentRLO() - get the current RLO analysis method object
(package private) RLO	RLO.getCurrentRLO() getCurrentRLO() - return current RLO
(package private) RLO	RLO.getRLObyMenuName(java.lang.String menuName) getRLObyMenuName() - get the RLO by menuName
(package private) RLO	RLO.getRLObyRscriptName(java.lang.String RscriptName) getRLObyRscriptName() - get the RLO by RscriptName
(package private) RLO	RLO.getRLObyID(int id) getRLObyID() - get the RLO by id

Methods in with parameters of type RLO

private boolean	Reval.genCurHPdataFile(RLO a, SimpleTable st) genCurHPdataFile() - generate exported input data file for current HP.
private boolean	Reval.genCurHPXYdataFile(RLO a, SimpleTable st, boolean useHPsetsFlag) genCurHPXYdataFile() - generate exported input data file for current HP-X and HP-Y or mean (HP-X set and mean HP-Y set).
private boolean	Reval.genCurHPXYsetsDataFile(RLO a, SimpleTable st) genCurHPXYsetsDataFile() - generate exported input data file for current HP-X and HP-Y sets data.
private boolean	Reval.genCurHPsetDataFile(RLO a, SimpleTable st, int inputType) genCurHPsetDataFile() - generate exported input data file for current HP set data (including: HP-X set, HP-Y set, HP-E list, current condition list).
private boolean	Reval.genCurOCLdataFile(RLO a, SimpleTable st) genCurOCLdataFile() - generate exported input data file for current Ordered Condition List data.
private boolean	Reval.genCurAnnotationDataFile(RLO a, SimpleTable st) genCurAnnotationDataFile() - generate exported input data file for current gene annotation data.
private boolean	Reval.genCurStateThresholdsFile(RLO a, SimpleTable st) genCurStateThresholdsFile() - generate exported input data file for current state thresholds data.
private boolean	Reval.genCurStateValuesFile(RLO a, SimpleTable st) genCurStateValuesFile() - generate exported input data file for current state flags and names values data.
private SimpleTable	Reval.cvtFloatArrayData2Table(RLO a, SimpleTable st, float[][] xData, float[][] yData, float[][] xBkgrd, float[][] yBkgrd, int nX, int nY, int nFiltered, boolean[] activeGeneList, java.lang.String[] fieldNames, java.lang.String[] classNames) cvtFloatArrayData2Table() - convert xData,yData nX,nY expression data for nGenes active genes to SimpleTable.
private SimpleTable	Reval.cvtStringArrayData2Table(RLO a, SimpleTable st, java.lang.String[][] sData, int nRows, int nCols, java.lang.String[] fieldNames) cvtStringArrayData2Table() - convert sData, nS, nRows to SimpleTable.