Uses of Class
GeneBitSet

Packages that use GeneBitSet

Uses of GeneBitSet in

Fields in declared as GeneBitSet

private static GeneBitSet	EventMenu.normCLbitSet link to global instanceof normalization GeneBitSet
private static GeneBitSet	EventMenu.wkCLbitSet link to global instance of working GeneBitSet
private static GeneBitSet	GeneBitSet.tempSetBL temporary bit set used in set operations
(package private) static GeneBitSet[]	GeneBitSet.userBS [1:maxUserBS] user assignable gene bit sets.
private GeneBitSet	GeneClass.allClBS working bit set of all genes
(package private) GeneBitSet	GeneList.bitSet

Methods in that return GeneBitSet

(package private) static GeneBitSet

GeneBitSet.lookupGeneSetObjByName(java.lang.String userSetName, boolean exactFlag) lookupGeneSetObjByName() - lookup GeneBitSet object by name in userBS[] DB.

Methods in with parameters of type GeneBitSet

(package private) boolean	GeneBitSet.copyBStoCL(GeneList c1Dst, GeneBitSet b2Src) copyBStoCL() - copy GeneBitSet b2Src to GeneList c1Dst.mList[].
(package private) static boolean	GeneBitSet.copyCLtoBS(GeneBitSet b1Dst, GeneList c2Src, boolean useCopyBitArrayFlag) copyCLtoBS() - copy GeneList c2Src to GeneBitSet b1Dst.
(package private) static boolean	GeneBitSet.copyBStoBS(GeneBitSet b1Dst, GeneBitSet b2Src) copyBStoBS() - copy GeneBitSet b2Src to GeneBitSet b1Dst.
(package private) boolean	GeneBitSet.union(GeneBitSet b1, GeneBitSet b2, GeneBitSet b3) union() - compute union of GeneBitSets sets (b1 & b2) ==> b3.
(package private) boolean	GeneBitSet.intersection(GeneBitSet b1, GeneBitSet b2, GeneBitSet b3) intersection() - intersection of GeneBitSets (b1 | b2) ==> b3.
(package private) boolean	GeneBitSet.difference(GeneBitSet b1, GeneBitSet b2, GeneBitSet b3) difference() - difference of GeneBitSets (b2 - b1)==> b3.
(package private) static int	GeneBitSet.lookupOrMakeNewGeneBitSet(java.lang.String userSetName, GeneBitSet bs) lookupOrMakeNewGeneBitSet() - lookup or create new GeneBitSet in userBS[].