Uses of Class
HierClustNode

Packages that use HierClustNode

Uses of HierClustNode in

Fields in declared as HierClustNode

(package private) static HierClustNode	ClusterGenes.hcn hierarchical clustering tree
private HierClustNode	ClusterGramCanvas.tree hierarchical cluster tree
private HierClustNode	DrawClusterGram.tree cluster tree
(package private) static HierClustNode	HierClustNode.topNode top node of the tree
(package private) static HierClustNode	HierClustNode.nextNode next node in traversal
(package private) static HierClustNode[]	HierClustNode.hierClusters hierarchical clusters [0:2*nObj-1] nHierClusters is the current one.
(package private) HierClustNode	HierClustNode.hcParent Dynamic node: if not null, then the parent of this node
(package private) HierClustNode	HierClustNode.hcRight Dynamic node: if not null, then right cluster
(package private) HierClustNode	HierClustNode.hcLeft Dynamic node: if not null, then left cluster

Methods in that return HierClustNode

(package private) HierClustNode	HierClustNode.findClosestNode(HierClustNode hcI, int i) findClosestNode() - find closest unvisited node hcJ to node hcI such that the distance between hcI and HcJ is a minmum.
(package private) static HierClustNode	HierClustNode.enumerateNodes() enumerateNodes() - enumerate the nodes (Right then Left) of tree.
(package private) static HierClustNode	HierClustNode.enumerateLeafNodes() enumerateLeafNodes() - enumerate Leaf nodes (Right then left) of tree.

Methods in with parameters of type HierClustNode

(package private) boolean	ClusterGramCanvas.updateData(GeneList orderedCL, HierClustNode tree) updateData() - update expression profile with new gene data
private void	ClusterGramCanvas.unpackTreeDgramLists(HierClustNode tree) unpackTreeDgramLists() - extract dGram arrays for drawing dendrograms
(package private) void	DrawClusterGram.updateCGplot(GeneList orderedCL, HierClustNode tree) updateCGplot() - update ClusterGram plots using new GeneList.
(package private) HierClustNode	HierClustNode.findClosestNode(HierClustNode hcI, int i) findClosestNode() - find closest unvisited node hcJ to node hcI such that the distance between hcI and HcJ is a minmum.
private float	HierClustNode.nodeNodeDistSQ(HierClustNode c1, HierClustNode c2) nodeNodeDistSQ() - compute node-node nDistV*(Euclidian distance squared).
private float[]	HierClustNode.calcMeanDataVect(HierClustNode c1, HierClustNode c2) calcMeanDataVect() - compute mean intensity vector of 2 nodes.

Constructors in with parameters of type HierClustNode

ClusterGramCanvas(MAExplorer mae, DrawClusterGram dcg, GeneList orderedCL, HierClustNode tree)
ClusterGramCanvas() - Constructor to display expresion profile in canvas

DrawClusterGram(MAExplorer mae, ShowPlotPopup spp, java.awt.Panel titlePanel, HierClustNode tree, GeneList orderedCL, java.lang.String title, int plotMode, boolean keepFlagsOnClosing)
DrawClusterGram() - Create popup grid of ClusterGram plots.

HierClustNode(HierClustNode hcRight, HierClustNode hcLeft)
HierClustNode() - construct top level hierarchical cluster node