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Packages that use SimpleTable | |
Uses of SimpleTable in |
Subclasses of SimpleTable in | |
(package private) class |
ConfigTable
This reads the Config file as a tab-delimited table to define the initial Configi state. |
(package private) class |
GipoTable
The GipoTable class read sthe tab-delimited GipoTable file. |
(package private) class |
MaHPquantTable
The class is only used to read a .quant file (File or URL) into an mae.ms instance. |
(package private) class |
MaInfoTable
This class reads optional extra sample specific information from the MaInfoTable.txt file. |
(package private) class |
SamplesTable
The SamplesTable class is database for the Samples DB Table. |
(package private) class |
Table
This class creates a table object with no data or data read from a tab-delimited file. |
Methods in that return SimpleTable | |
(package private) SimpleTable |
CompositeDatabase.calDNAhybSamplesTable()
calDNAhybSamplesTable() - calc. |
(package private) SimpleTable |
CompositeDatabase.calcHP_HPcorrelations()
calcHP_HPcorrelations() - compute HP vs. |
static SimpleTable |
MJAbase.cvtHashtable2SimpleTable(java.util.Hashtable ht)
cvtHashtable2SimpleTable() - creating table from Hashtable encoded table. |
static SimpleTable |
MJAutil.createMontageTableOfCurGene(boolean addImgPath)
createMontageTableOfCurGene() - create montage table of current gene. |
static SimpleTable |
MJAutil.createMontageTableOfGene(int gid,
boolean addFullImagePathFlag)
createMontageTableOfGene() - create montage table of gene data across the HP-E sample conditions. |
private SimpleTable |
Report.createTotGeneRptTbl(Gene[] mListOrig,
int nMlistOrig,
int maxGene,
java.lang.String title,
int sortDirection,
java.lang.String dataName,
boolean showGeneName,
int reportMode)
createTotGeneRptTbl() - generate total gene report table. |
private SimpleTable |
Reval.cvtFloatArrayData2Table(RLO a,
SimpleTable st,
float[][] xData,
float[][] yData,
float[][] xBkgrd,
float[][] yBkgrd,
int nX,
int nY,
int nFiltered,
boolean[] activeGeneList,
java.lang.String[] fieldNames,
java.lang.String[] classNames)
cvtFloatArrayData2Table() - convert xData,yData nX,nY expression data for nGenes active genes to SimpleTable. |
private SimpleTable |
Reval.cvtStringArrayData2Table(RLO a,
SimpleTable st,
java.lang.String[][] sData,
int nRows,
int nCols,
java.lang.String[] fieldNames)
cvtStringArrayData2Table() - convert sData, nS, nRows to SimpleTable. |
(package private) SimpleTable |
SamplesTable.makeHPrestrictedTable(Table srcTbl)
makeHPrestrictedTable() - make a Table of HPs restricted by login required. |
(package private) SimpleTable |
Table.getTableRowsSubset(SimpleTable t,
java.lang.String key,
java.lang.String fieldName,
java.lang.String newTitle)
getTableRowsSubset() - make new table subset of table by (field,key) |
(package private) SimpleTable |
Table.getTableRowsSubset(Table t,
java.lang.String[] fieldList,
java.lang.String[] newFieldList,
java.lang.String[] urlPrefix,
java.lang.String[] urlSuffix,
int nFields,
java.lang.String newTitle)
getTableRowsSubset() - make new table of specified fields by fieldList[] and in the order in which they appear in the fieldList[]. |
(package private) SimpleTable |
Table.insertTblInULHCtable(int nRows,
int nCols,
java.lang.String nTitle)
insertTblInULHCtable() - insert table into U.L.H.C. |
Methods in with parameters of type SimpleTable | |
static java.util.Hashtable |
MJAbase.cvtTable2Hashtable(SimpleTable tbl)
cvtTable2Hashtable() - convert SimpleTable tbl to Hashtable object. |
private boolean |
Reval.genCurHPdataFile(RLO a,
SimpleTable st)
genCurHPdataFile() - generate exported input data file for current HP. |
private boolean |
Reval.genCurHPXYdataFile(RLO a,
SimpleTable st,
boolean useHPsetsFlag)
genCurHPXYdataFile() - generate exported input data file for current HP-X and HP-Y or mean (HP-X set and mean HP-Y set). |
private boolean |
Reval.genCurHPXYsetsDataFile(RLO a,
SimpleTable st)
genCurHPXYsetsDataFile() - generate exported input data file for current HP-X and HP-Y sets data. |
private boolean |
Reval.genCurHPsetDataFile(RLO a,
SimpleTable st,
int inputType)
genCurHPsetDataFile() - generate exported input data file for current HP set data (including: HP-X set, HP-Y set, HP-E list, current condition list). |
private boolean |
Reval.genCurOCLdataFile(RLO a,
SimpleTable st)
genCurOCLdataFile() - generate exported input data file for current Ordered Condition List data. |
private boolean |
Reval.genCurAnnotationDataFile(RLO a,
SimpleTable st)
genCurAnnotationDataFile() - generate exported input data file for current gene annotation data. |
private boolean |
Reval.genCurStateThresholdsFile(RLO a,
SimpleTable st)
genCurStateThresholdsFile() - generate exported input data file for current state thresholds data. |
private boolean |
Reval.genCurStateValuesFile(RLO a,
SimpleTable st)
genCurStateValuesFile() - generate exported input data file for current state flags and names values data. |
private boolean |
Reval.writeRdataTableFile(SimpleTable st,
java.lang.String fileName)
writeRdataTableFile() - write the MAE table data as R input file |
private SimpleTable |
Reval.cvtFloatArrayData2Table(RLO a,
SimpleTable st,
float[][] xData,
float[][] yData,
float[][] xBkgrd,
float[][] yBkgrd,
int nX,
int nY,
int nFiltered,
boolean[] activeGeneList,
java.lang.String[] fieldNames,
java.lang.String[] classNames)
cvtFloatArrayData2Table() - convert xData,yData nX,nY expression data for nGenes active genes to SimpleTable. |
private SimpleTable |
Reval.cvtStringArrayData2Table(RLO a,
SimpleTable st,
java.lang.String[][] sData,
int nRows,
int nCols,
java.lang.String[] fieldNames)
cvtStringArrayData2Table() - convert sData, nS, nRows to SimpleTable. |
(package private) SimpleTable |
Table.getTableRowsSubset(SimpleTable t,
java.lang.String key,
java.lang.String fieldName,
java.lang.String newTitle)
getTableRowsSubset() - make new table subset of table by (field,key) |
(package private) Table |
Table.copyTable(SimpleTable st)
copyTable() - copy SimpleTable data to this Table. |
Constructors in with parameters of type SimpleTable | |
Table(SimpleTable st)
Table() - constructor for creating table from a SimpleTable |
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