Uses of Class
SimpleTable

Packages that use SimpleTable

Uses of SimpleTable in

Subclasses of SimpleTable in

(package private) class	ConfigTable This reads the Config file as a tab-delimited table to define the initial Configi state.
(package private) class	GipoTable The GipoTable class read sthe tab-delimited GipoTable file.
(package private) class	MaHPquantTable The class is only used to read a .quant file (File or URL) into an mae.ms instance.
(package private) class	MaInfoTable This class reads optional extra sample specific information from the MaInfoTable.txt file.
(package private) class	SamplesTable The SamplesTable class is database for the Samples DB Table.
(package private) class	Table This class creates a table object with no data or data read from a tab-delimited file.

Methods in that return SimpleTable

(package private) SimpleTable	CompositeDatabase.calDNAhybSamplesTable() calDNAhybSamplesTable() - calc.
(package private) SimpleTable	CompositeDatabase.calcHP_HPcorrelations() calcHP_HPcorrelations() - compute HP vs.
static SimpleTable	MJAbase.cvtHashtable2SimpleTable(java.util.Hashtable ht) cvtHashtable2SimpleTable() - creating table from Hashtable encoded table.
static SimpleTable	MJAutil.createMontageTableOfCurGene(boolean addImgPath) createMontageTableOfCurGene() - create montage table of current gene.
static SimpleTable	MJAutil.createMontageTableOfGene(int gid, boolean addFullImagePathFlag) createMontageTableOfGene() - create montage table of gene data across the HP-E sample conditions.
private SimpleTable	Report.createTotGeneRptTbl(Gene[] mListOrig, int nMlistOrig, int maxGene, java.lang.String title, int sortDirection, java.lang.String dataName, boolean showGeneName, int reportMode) createTotGeneRptTbl() - generate total gene report table.
private SimpleTable	Reval.cvtFloatArrayData2Table(RLO a, SimpleTable st, float[][] xData, float[][] yData, float[][] xBkgrd, float[][] yBkgrd, int nX, int nY, int nFiltered, boolean[] activeGeneList, java.lang.String[] fieldNames, java.lang.String[] classNames) cvtFloatArrayData2Table() - convert xData,yData nX,nY expression data for nGenes active genes to SimpleTable.
private SimpleTable	Reval.cvtStringArrayData2Table(RLO a, SimpleTable st, java.lang.String[][] sData, int nRows, int nCols, java.lang.String[] fieldNames) cvtStringArrayData2Table() - convert sData, nS, nRows to SimpleTable.
(package private) SimpleTable	SamplesTable.makeHPrestrictedTable(Table srcTbl) makeHPrestrictedTable() - make a Table of HPs restricted by login required.
(package private) SimpleTable	Table.getTableRowsSubset(SimpleTable t, java.lang.String key, java.lang.String fieldName, java.lang.String newTitle) getTableRowsSubset() - make new table subset of table by (field,key)
(package private) SimpleTable	Table.getTableRowsSubset(Table t, java.lang.String[] fieldList, java.lang.String[] newFieldList, java.lang.String[] urlPrefix, java.lang.String[] urlSuffix, int nFields, java.lang.String newTitle) getTableRowsSubset() - make new table of specified fields by fieldList[] and in the order in which they appear in the fieldList[].
(package private) SimpleTable	Table.insertTblInULHCtable(int nRows, int nCols, java.lang.String nTitle) insertTblInULHCtable() - insert table into U.L.H.C.

Methods in with parameters of type SimpleTable

static java.util.Hashtable	MJAbase.cvtTable2Hashtable(SimpleTable tbl) cvtTable2Hashtable() - convert SimpleTable tbl to Hashtable object.
private boolean	Reval.genCurHPdataFile(RLO a, SimpleTable st) genCurHPdataFile() - generate exported input data file for current HP.
private boolean	Reval.genCurHPXYdataFile(RLO a, SimpleTable st, boolean useHPsetsFlag) genCurHPXYdataFile() - generate exported input data file for current HP-X and HP-Y or mean (HP-X set and mean HP-Y set).
private boolean	Reval.genCurHPXYsetsDataFile(RLO a, SimpleTable st) genCurHPXYsetsDataFile() - generate exported input data file for current HP-X and HP-Y sets data.
private boolean	Reval.genCurHPsetDataFile(RLO a, SimpleTable st, int inputType) genCurHPsetDataFile() - generate exported input data file for current HP set data (including: HP-X set, HP-Y set, HP-E list, current condition list).
private boolean	Reval.genCurOCLdataFile(RLO a, SimpleTable st) genCurOCLdataFile() - generate exported input data file for current Ordered Condition List data.
private boolean	Reval.genCurAnnotationDataFile(RLO a, SimpleTable st) genCurAnnotationDataFile() - generate exported input data file for current gene annotation data.
private boolean	Reval.genCurStateThresholdsFile(RLO a, SimpleTable st) genCurStateThresholdsFile() - generate exported input data file for current state thresholds data.
private boolean	Reval.genCurStateValuesFile(RLO a, SimpleTable st) genCurStateValuesFile() - generate exported input data file for current state flags and names values data.
private boolean	Reval.writeRdataTableFile(SimpleTable st, java.lang.String fileName) writeRdataTableFile() - write the MAE table data as R input file
private SimpleTable	Reval.cvtFloatArrayData2Table(RLO a, SimpleTable st, float[][] xData, float[][] yData, float[][] xBkgrd, float[][] yBkgrd, int nX, int nY, int nFiltered, boolean[] activeGeneList, java.lang.String[] fieldNames, java.lang.String[] classNames) cvtFloatArrayData2Table() - convert xData,yData nX,nY expression data for nGenes active genes to SimpleTable.
private SimpleTable	Reval.cvtStringArrayData2Table(RLO a, SimpleTable st, java.lang.String[][] sData, int nRows, int nCols, java.lang.String[] fieldNames) cvtStringArrayData2Table() - convert sData, nS, nRows to SimpleTable.
(package private) SimpleTable	Table.getTableRowsSubset(SimpleTable t, java.lang.String key, java.lang.String fieldName, java.lang.String newTitle) getTableRowsSubset() - make new table subset of table by (field,key)
(package private) Table	Table.copyTable(SimpleTable st) copyTable() - copy SimpleTable data to this Table.

Constructors in with parameters of type SimpleTable

Table(SimpleTable st)
Table() - constructor for creating table from a SimpleTable