Uses of Class
Table

Packages that use Table

Uses of Table in

Subclasses of Table in

(package private) class	ConfigTable This reads the Config file as a tab-delimited table to define the initial Configi state.
(package private) class	GipoTable The GipoTable class read sthe tab-delimited GipoTable file.
(package private) class	MaHPquantTable The class is only used to read a .quant file (File or URL) into an mae.ms instance.
(package private) class	MaInfoTable This class reads optional extra sample specific information from the MaInfoTable.txt file.
(package private) class	SamplesTable The SamplesTable class is database for the Samples DB Table.

Fields in declared as Table

(package private) Table	GeneClass.gincDB (opt.) Table of gene classes if it exists
(package private) Table	PopupProjDirGuesser.prjTbl "Project-Name Project-Dir" table
private Table	Report.updateTable Table used for updating a report
private Table	UserState.msuTbl application startup database table

Methods in that return Table

(package private) Table	CompositeDatabase.createHPmeanAndVarTable() createHPmeanAndVarTable() - create table (HP,mn,stdDev,min,max,median) of raw intensity data.
private Table	Report.createTableOfExprProfiles(Gene[] mList, int nC, boolean normByHP_Xflag) createTableOfExprProfiles() - make Table of expression profiles for mList[0:nC-1]
private Table	Report.createTableOfOCL_Fstat(Gene[] mList, int nC) createTableOfOCL_Fstat() - make Table of OCL F-test for mList[0:nC-1] If the OCL F-Test filter is active, then report F-test statistics
private Table	Report.createTableOfHP_XYstat(Gene[] mList, int nC) createTableOfHP_XYstat() - make Table of HP_XYstatistics for mList[0:nC-1] If the t-Test filter is active, then report t-test statistics If the KS-Test filter is active, then report KS-test statistics
private Table	Report.createTableKmeansClusterStats(Gene[] mList, int nC) createTableKmeansClusterStats() - make Table of Kmeans clusters for mList[0:nC-1]
private Table	Report.createTotURLgeneRptTbl(Table kcTbl, Gene[] mListOrig, int nMlistOrig, int maxGene, java.lang.String title, int sortDirection, java.lang.String dataName, int[] cellFormat, boolean showGeneName) createTotURLgeneRptTbl() - generate total URL gene report table
(package private) Table	Table.copyTable(SimpleTable st) copyTable() - copy SimpleTable data to this Table.

Methods in with parameters of type Table

private java.lang.String	Report.cvGene2TabDelimStr(Gene gene, int i, java.lang.String dataName, boolean showGeneName, Table epTbl, Table hpxyTbl) cvGene2TabDelimStr() - convert a gene to printable tab-delimited string
private java.lang.String	Report.getGeneTabDelimFieldsStr(java.lang.String dataName, boolean showGeneName, Table epTbl, Table hpxyTbl) getGeneTabDelimFieldsStr() - create tab delimited gene fields string
private Table	Report.createTotURLgeneRptTbl(Table kcTbl, Gene[] mListOrig, int nMlistOrig, int maxGene, java.lang.String title, int sortDirection, java.lang.String dataName, int[] cellFormat, boolean showGeneName) createTotURLgeneRptTbl() - generate total URL gene report table
private void	Report.showPopupSpreadsheetGeneReport(Table kcTbl, Table kcUrlTbl, Gene[] mListOrig, int nMlistOrig, int maxGene, java.lang.String title, int sortDirection, java.lang.String dataName, int[] cellFormat, boolean showGeneName) showPopupSpreadsheetGeneReport() - show gene report with top maxGene's.
(package private) SimpleTable	SamplesTable.makeHPrestrictedTable(Table srcTbl) makeHPrestrictedTable() - make a Table of HPs restricted by login required.
(package private) SimpleTable	Table.getTableRowsSubset(Table t, java.lang.String[] fieldList, java.lang.String[] newFieldList, java.lang.String[] urlPrefix, java.lang.String[] urlSuffix, int nFields, java.lang.String newTitle) getTableRowsSubset() - make new table of specified fields by fieldList[] and in the order in which they appear in the fieldList[].

Constructors in with parameters of type Table

PopupProjDirGuesser(MAExplorer maE, char chFirstTyped, java.awt.Font font, Table prjTbl)
PopupProjDirGuesser() - constructor for project director guesser which assumes the HP menu item list is already sorted when it is created during MAExplorer initialization.

ShowSpreadsheetPopup(MAExplorer mae, Report report, Table t, java.lang.String fontSizeStr, java.lang.String title, java.lang.String popupName, int popupPropertyBits, boolean urlViewerFlag)
ShowSpreadsheetPopup() - constructor to create a spreadsheet from table without URL spec.