MAExplorer - Microarray Exploratory Data Analysis

Table 1.2.1 Displays affected by the normalization mode

Table 2.4.1 Rules for automatic classification of gene names to Gene Class sets

Table 2.4.4.1 Pseudocolor ratio or Zdiff array image assignments

Table 2.4.5.4 ClusterGram pseudocolor assignments

Table 3.2 Steps in a data-mining analysis

Table 3.3.1 List of threshold sliders

Table C.2.1 List of Samples data file table fields

Table C.2.1.1 List of optional Samples data file table fields

Table C.3.1 List of Quant data file table fields

Table C.4 List of GIPO data file table fields

Table C.4.1 List of GIPO data file table fields

Table C.4.2 List of GIPO data file table fields

Table C.4.3 List of Master Gene IDs

Table C.4.1 List of QualCheck codes and their semantics

Table C.5 List of Configuration data file table fields

Table C.5.1 List of configuration database-specific content and geometry entries

Table C.5.2 List of default threshold configuration entries

Table C.5.3 List of array auxiliary database files entries

Table C.5.4 List of (Table,Field) mappings to configure specific data types

Table C.5.5 List of genomic database URLs entries

Table C.5.6 List database-specific user menu entries

Table D.2.2 Parameters specifying Web database access

Table D.4 The Minimum data required entries for .mae startup files

Table D.4.1 Optional entries for .mae startup files

Table E.2 Comparison of client-centric vs. server-centric data mining